New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5960794	79 (1.340)	5 (0.090)	5/246	NT	6.0%	intergenic (‑157/‑83)	cyaY/PP_5226	frataxin/Lppl family lipoprotein
	?	NC_002947	= 5960840	82 (1.460)					intergenic (‑203/‑37)	cyaY/PP_5226	frataxin/Lppl family lipoprotein

ACCTCGAAATTGGCTGCGTTACAGGCAAGCCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5960645‑5960794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgAGTATACCGAGCGACCGGCGGCTTGCCTATGCAAGGACCGGTCCGCCGGGCGGGCTATGCTTAGCCTCTGCGCAGCCCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTGAAGGCAACGGCTAAACCTTTGCATTCGGCGGC  <  NC_002947/5960840‑5960695                                                                                                                                                                                                                                                                                                          ACCTCGAAATTGGCTGCGTTACAGGCAAGCCGGGCAAGATACGGGCGCTTGCCGACGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCC                                                                                                                                                     <  4:89116/149‑1    TCGAAATTGGCTGCGTTACAGGCAAGCCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGagtata                                                                                                                                                  >  8:236013/1‑143                         GCAAGCCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCTGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGAGTATACCGAGCGACCGGCGGCT                                                                                                                             >  7:165470/1‑149                                 GGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGAGTATACCGAGCGACCGGCGGCTTGCCTATG                                                                                                                     >  5:357441/1‑149                                                        CGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGAGTATACCGAGCGACCGGCGGCTTGCCTATGCAAGGACCGGTCCGCCGGGCGGG                                                                                              <  6:357441/149‑1                                                         GAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCAGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGAGTATACCGAGCGACCGGCGGCTTGCCTATGCAAGGACCGGTCCGCCGGGCGGGC                                                                                             <  8:165470/149‑1                                                              CAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATA‑‑‑‑GCCCGAGTATACCGAGCGACCGGCGGCTTGCCTATGCAAGGACCGGTCCGCCGGGCGGGCTATGCTTA                                                                                     <  7:236013/148‑1                                                                                                                                                    CCGAGTATACCGAGCGACCGGCGGCTTGCCTATGCAAGGACCGGTCCGCCGGGCGGGCTATGCTTAGCCTCTGCGCAGCCCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTGAAGGCAACGGCTAAACCTTTGCATTCGGCGGC  <  2:214763/149‑1                                                                                                                                                                                                                                                                                                          ACCTCGAAATTGGCTGCGTTACAGGCAAGCCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5960645‑5960794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgAGTATACCGAGCGACCGGCGGCTTGCCTATGCAAGGACCGGTCCGCCGGGCGGGCTATGCTTAGCCTCTGCGCAGCCCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTGAAGGCAACGGCTAAACCTTTGCATTCGGCGGC  <  NC_002947/5960840‑5960695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.