New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	929128 =	39 (0.660)	3 (0.050)	3/250	NT	6.3%	coding (16494/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	929206 =	52 (0.910)					coding (16416/18933 nt)	PP_0806	surface adhesion protein

CTGAACAGCAGGTTGCCGGCAGCCGCAGGCGGGGTCAGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGGGCGGCTGGCGGGGTGGTGT  >  NC_002947/928982‑929273                                                                                                                                                    |                                                                                                                                                  cTGAACAGCAGGTTGCCGGCAGCCGCAGGCGGGGTCAGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAg                                                                                                                                                 <  1:189222/149‑1 (MQ=255) aacgacgggcaactgttggtggtacgccaggccgatgctgccggcaacctgtccgccagcaccagcctgaccgcgccggacaccaccccgccagccgccccgctggccaccatcaacgccaacggcacctcggtcagtggttctggcCa                                                                                                                                                  >  5:225390‑M1/148‑149 (MQ=255)  tGAACAGCAGGTTGCCGGCAGCCGCAGGCGGGGTCAGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAgg                                                                                                                                                >  4:364957/1‑149 (MQ=255)   cgacgggcaactgctggtggtacgccaggccgatgctgccggcaacctgtccgccagcaccagcctgaccgcgccggacaccaccccgccagccgccccgctggccaccatcaacgccaacggcacctcggtcagtggttctggcCAgg                                                                                                                                                <  4:257207‑M1/4‑1 (MQ=255)         cagGTTGCCGGCAGCCGCAGGCGGGGTCAGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTtgc                                                                                                                                         <  6:237220/149‑1 (MQ=255)           ggTTGCCGGCAGCCGCAGGCGGGGTCAGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTtgctg                                                                                                                                       <  7:281695/149‑1 (MQ=255)                     aGCCGCAGGCGGGGTCAGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTg                                                                                                                             <  2:149679/149‑1 (MQ=255)                      gCCGCAGGCGGGGTCAGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGc                                                                                                                            <  4:189771/149‑1 (MQ=255)                               ggggTCAGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTa                                                                                                                        <  8:989/144‑1 (MQ=255)                               ggggTCAGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTa                                                                                                                        >  7:989/1‑144 (MQ=255)                                     aGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACgg                                                                                                              >  6:304115/1‑148 (MQ=255)                                               cGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCt                                                                                                    <  5:62860/148‑1 (MQ=255)                                                       gcAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCAc                                                                                           >  6:44547/1‑149 (MQ=255)                                                               tgtgGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGgcgc                                                                                                     >  3:96412/1‑131 (MQ=255)                                                               tgtgGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGgcgc                                                                                                     <  4:96412/131‑1 (MQ=255)                                                               cagcctgaccgcgccggacaccaccccgccagccgccccgctggccaccatcaacgccaacggcacctcggtcagtggttctggcCAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGAcc                                                                                    >  7:8337‑M1/86‑149 (MQ=255)                                                                    acacATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTAc                                                                                                           >  6:262430/1‑120 (MQ=255)                                                                     cacaTTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGtgctgc                                                                             >  6:55031/1‑149 (MQ=255)                                                                        aTTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGa                                                                          >  2:104809/1‑149 (MQ=255)                                                                            ccGGCGCTGTCGGTGAGGGTGACACTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTg                                                                      >  2:328480/1‑149 (MQ=255)                                                                               gcgcTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTg                                                                      <  5:277879/146‑1 (MQ=255)                                                                               gcgcTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTg                                                                      >  6:277879/1‑146 (MQ=255)                                                                                   tGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGaa                                                               >  2:162070/1‑149 (MQ=255)                                                                                   tGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGaa                                                               >  3:98524/1‑149 (MQ=255)                                                                                    caccccgccagccgccccgctggccaccatcaacgccaacggcacctcggtcagtggttctggcCAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGcc                                                                   <  8:307062‑M1/81‑1 (MQ=255)                                                                                    caccccgccagccgccccgctggccaccatcaacgccaacggcacctcggtcagtggttctggcCAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGcc                                                                   >  7:307062‑M1/65‑145 (MQ=255)                                                                                     tCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAAc                                                              <  5:55031/148‑1 (MQ=255)                                                                                       ggTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCAc                                                           <  5:304115/149‑1 (MQ=255)                                                                                         tGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTg                                                         <  1:104809/149‑1 (MQ=255)                                                                                             ggTGACGCTGAGCGCCTGGTTGTCGATCTGCTGCCGCAGTCAGGCTGACCACGAACAGGCCGTTGATGCCAACCGTTGCGTTACCCATTACGTTACCGGCGCTGTTGCGCACGGTGACCGTGATGCCGACCTGGCCAGAACCACTGAcc                                                      >  1:226739/1‑149 (MQ=255)                                                                                             ggTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGATGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGCGACCGTGCTGCCGACCTGGCCAGAACCACTGACCg                                                     >  6:350386/1‑149 (MQ=255)                                                                                              gTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGa                                                        <  1:323096/145‑1 (MQ=255)                                                                                              gTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGa                                                        >  2:323096/1‑145 (MQ=255)                                                                                                       aGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGtt                                           <  1:328480/149‑1 (MQ=255)                                                                                                         cgcCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTgg                                         >  8:62321/1‑149 (MQ=255)                                                                                                           ccTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCg                                       >  5:12279/1‑149 (MQ=255)                                                                                                                   tCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGAtggt                               <  2:226739/149‑1 (MQ=255)                                                                                                                     gATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGAtggtgg                             >  2:248939/1‑149 (MQ=255)                                                                                                                           c‑gccgcAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCg                       <  5:147182/149‑1 (MQ=255)                                                                                                                                 cAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGggcg                  <  3:80387/149‑1 (MQ=255)                                                                                                                                       ggCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGGGCGGCTGGc            >  4:330738/1‑149 (MQ=255)                                                                                                                                        gCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGGGCGGCTGGCg           >  4:72995/1‑149 (MQ=255)                                                                                                                                         cTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGGGCGGCTGGCgg          <  6:12279/149‑1 (MQ=255)                                                                                                                                            aCCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGGGCGGCTGGCGGggt       <  3:364957/149‑1 (MQ=255)                                                                                                                                             ccACGAACAGGCCGGTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGGGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGGGCGGCTGGCGGggtg      <  5:350386/149‑1 (MQ=255)                                                                                                                                              cACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGTCGTTGATGGTGGCCAGCGGGGCGGCTGGCGGggtgg     >  8:248930/1‑149 (MQ=255)                                                                                                                                               aCGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGGGCGGCTGGCGGggtggt    >  6:213616/1‑149 (MQ=255)                                                                                                                                               aCGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGGGCGGCTGGCGGggtggt    <  7:248930/149‑1 (MQ=255)                                                                                                                                               aCGAACAGCCCGTTGCTGCCAACCGTTGCGGTACCCAGTACTTAACCGCAGCTGTTGCGCACGGTGACCGTGATCCCGACCTGGCCAGAACCACTGACCGAGCTGACGTTCGCGTTGAtggac                              >  4:297611/1‑121 (MQ=255)                                                                                                                                                 gAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGGGCGGCTGGCGGGGTGgtgt  <  5:44547/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CTGAACAGCAGGTTGCCGGCAGCCGCAGGCGGGGTCAGGTCCGGTGCGGTCAGCGCAGTGCCTGTGGACACATTACCGGCGCTGTCGGTGAGGGTGACGCTGAGCGCCTGGTTGTCGATCTGC‑GCCGCAGTCAGGCTGACCACGAACAGGCCGTTGCTGCCCACCGTTGCGGTACCCAGTACGGTACCGGCGCTGTTGCGCACGGTGACCGTGCTGCCGACCTGGCCAGAACCACTGACCGAGGTGCCGTTGGCGTTGATGGTGGCCAGCGGGGCGGCTGGCGGGGTGGTGT  >  NC_002947/928982‑929273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.