New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1138585 =	48 (0.820)	3 (0.050)	3/246	NT	6.2%	intergenic (‑116/+49)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
	?	NC_002947	1138647 =	45 (0.800)					coding (998/1011 nt)	arcB	ornithine carbamoyltransferase

TTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTCG  >  NC_002947/1138441‑1138724                                                                                                                                                 |                                                                                                                                             taggcaagcagatcgccgaacatacccggacctggccaacggcatcgaagtgaccgatgacgtgttcgagtcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctGGCt                                                                                                                                           <  7:159100‑M1/4‑1 (MQ=255)       cccAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCt                                                                                                                                    >  4:101841/1‑149 (MQ=255)         cAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTc                                                                                                                                  >  4:35383/1‑149 (MQ=255)            tGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTcgcg                                                                                                                               <  2:199565/149‑1 (MQ=255)             gCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCgg                                                                                                                              <  8:304177/149‑1 (MQ=255)              caacaaCGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCggg                                                                                                                             <  3:90282/149‑1 (MQ=255)               aacaacGATGCGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGc                                                                                                                            <  1:279301/149‑1 (MQ=255)               aacaacGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGc                                                                                                                            >  2:71066/1‑149 (MQ=255)               aacaacGATACGCATCTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGCCTGACGCCTTCGCggg                                                                                                                             >  7:145712/1‑148 (MQ=255)                          gCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTcc                                                                                                                 >  5:17167/1‑149 (MQ=255)                           cATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTcc                                                                                                                 >  3:278473/1‑148 (MQ=255)                               tgGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCca‑ca                                                                                                            <  3:101841/148‑1 (MQ=255)                                   aTGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGa                                                                                                        <  6:17167/148‑1 (MQ=255)                                     gTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTg                                                                                                     >  6:28374/1‑149 (MQ=255)                                     gTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTg                                                                                                     >  6:22957/1‑149 (MQ=255)                                        cTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGa                                                                                                        >  7:281298/1‑143 (MQ=255)                                        cTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGa                                                                                                        <  8:281298/143‑1 (MQ=255)                                        cTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCCCGGGCACGCCCGCTCCCA‑CAGGGACTGCgg                                                                                                  <  1:30055/149‑1 (MQ=255)                                        cTTTAGCGAAAGAAGGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCg                                                                                                   <  5:58503/148‑1 (MQ=255)                                            aGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATTCGGCTGAAGCCTTCGCGGGCACGCCCGCTCCCA‑CAgg                                                                                                          >  1:148966/1‑137 (MQ=255)                                             gCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTAc                                                                                             <  4:278473/149‑1 (MQ=255)                                              cgaagtgaccgatgacgtgttcgagtcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctg                                                                                                                                              <  3:8540‑M1/1‑1 (MQ=255)                                              cgaagtgaccgatgacgtgttcgagtcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctg                                                                                                                                              >  4:8540‑M1/100‑100 (MQ=255)                                                  aGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTtata                                                                                        <  3:35383/149‑1 (MQ=255)                                                      tgaatgGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGAt                                                                                     >  6:12391/1‑148 (MQ=255)                                                         atgGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCACCAGGGACTGCGGGCTACTTATAGATCa                                                                                   <  1:191341/148‑1 (MQ=255)                                                             cgtgttcgagtcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAgg                                                                             >  7:250533‑M1/85‑149 (MQ=255)                                                               tGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGt                                                                           >  1:108454/1‑149 (MQ=255)                                                                 tCGCTGCACGGAAGGTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAgg                                                                             <  8:290006/145‑1 (MQ=255)                                                                 tCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGTCATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTc                                                                          >  7:255534/1‑148 (MQ=255)                                                                 tCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAgg                                                                             >  7:290006/1‑145 (MQ=255)                                                                       tcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATAc                                                                     >  3:247756‑M1/75‑147 (MQ=255)                                                                       tcgccagcgtgcatcgccttcgagcaggcggaaaaccgcatgcacacgatcaaggcgatcctggtatcgaccctGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATAc                                                                     <  4:247756‑M1/73‑1 (MQ=255)                                                                       cACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATAc                                                                     >  6:302639/1‑147 (MQ=255)                                                                                 gCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCtt                                                         >  4:137762/1‑149 (MQ=255)                                                                                    gAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGa                                                       >  8:198844/1‑148 (MQ=255)                                                                                          gCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCgtgt                                                 <  1:71066/148‑1 (MQ=255)                                                                                            tgtgGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCa                                              >  3:142164/1‑149 (MQ=255)                                                                                                      ggCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTc                                    >  8:159100/1‑149 (MQ=255)                                                                                                       gactGCCCGCGATGAGGCGAGACCTGTCATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGGTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGTGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTcc                                   <  8:145712/146‑1 (MQ=255)                                                                                                       gCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTTACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTcc                                   <  3:137762/149‑1 (MQ=255)                                                                                                           gCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCt                               >  3:109609/1‑149 (MQ=255)                                                                                                            cccGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCt                               <  4:109609/148‑1 (MQ=255)                                                                                                             ccGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGc                             <  5:12391/149‑1 (MQ=255)                                                                                                               gcgAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGAACGCCTTGATCGTGTCCATGCGGTTTTCCGActcctc                           >  2:172884/1‑149 (MQ=255)                                                                                                                 gAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGa                         <  7:198844/149‑1 (MQ=255)                                                                                                                  aaGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGaa                        <  4:142164/149‑1 (MQ=255)                                                                                                                        ccAGACCTGTCATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGAt                  <  8:255534/149‑1 (MQ=255)                                                                                                                            aCCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCAc              <  2:108454/149‑1 (MQ=255)                                                                                                                            aCCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCAc              >  3:146078/1‑149 (MQ=255)                                                                                                                                       tcGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCgtgt                                                 <  8:72524/103‑1 (MQ=255)                                                                                                                                       tcGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCgtgt                                                 >  7:72524/1‑103 (MQ=255)                                                                                                                                       tcGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTc   >  1:330406/1‑149 (MQ=255)                                                                                                                                         gatgatGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTCg  >  7:105292/1‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                             TTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGACCTGACATCATCGATGATGCGGCTGACGCCTTCGCGGGCACGCCCGCTCCCA‑CAGGGACTGCGGGCTACTTATAGATCAGCCAGGGTCGATACCAGGATCGCCTTGATCGTGTGCATGCGGTTTTCCGCCTGCTCGAAGGCGATGCACGCTGGCGACTCG  >  NC_002947/1138441‑1138724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.