New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2085498	44 (0.750)	3 (0.050)	3/246	NT	6.1%	intergenic (+207/‑388)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	4022795 =	50 (0.890)					intergenic (‑490/+178)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease

GCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGT  >  NC_002947/2085351‑2085644                                                                                                                                                      |                                                                                                                                                   gctCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGcgcg                                                                                                                                                   >  2:71344/1‑149 (MQ=32)        cTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGCAGGCCCCATCCTGGGGCC‑‑CAGCGCttgacgg                                                                                                                                             <  3:223182‑M1/148‑8 (MQ=255)        cTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGtcctcc                                                                                                                                            >  5:328476/1‑149 (MQ=32)        cTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGtcctc                                                                                                                                             <  5:312760/148‑1 (MQ=32)         tttGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTccc                                                                                                                                           >  7:35022/1‑149 (MQ=32)             gCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGa                                                                                                                                       <  5:344860/149‑1 (MQ=32)             gCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGa                                                                                                                                       <  6:328476/149‑1 (MQ=32)             gCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGa                                                                                                                                       <  8:35022/149‑1 (MQ=32)             gCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGa                                                                                                                                       <  1:71344/149‑1 (MQ=32)              cTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGtc                                                                                                                                                >  8:254258/1‑139 (MQ=32)              cTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGtc                                                                                                                                                <  7:254258/139‑1 (MQ=32)               ttttGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAg                                                                                                                                      >  7:83014/1‑148 (MQ=32)               ttttGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAg                                                                                                                                      >  6:311637/1‑148 (MQ=32)                   gCTTCTAAGCGCGCGGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGCCTTGCGCAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑TGCCCGAGGATGGGGCCTGCAGCGCGGTCCTCGCGGGAGCAAGc                                                                                                                                 <  2:61378/149‑1 (MQ=11)                     ttCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGccc                                                                                                                               >  1:62842/1‑149 (MQ=32)                     ttCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGccc                                                                                                                               >  7:146977/1‑149 (MQ=32)                       cTAAGCGGGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGccc                                                                                                                               <  6:96321/147‑1 (MQ=17)                       cTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCg                                                                                                                              >  7:350272/1‑148 (MQ=32)                         aaGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAg                                                                                                                           >  6:84363/1‑149 (MQ=32)                          aGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAg                                                                                                                           <  3:255127/148‑1 (MQ=32)                           gcgcgcGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGTGCGGTCCTCCCGGGAGCAAGCCCGGAGt                                                                                                                          >  3:44938/1‑148 (MQ=17)                           gcgcgcGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTg                                                                                                                         <  5:84363/149‑1 (MQ=32)                              cgcgGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAgg                                                                                                                      >  1:42330/1‑149 (MQ=32)                                      ttCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCg                                                                                                              >  3:368869/1‑149 (MQ=32)                                         aGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGa                                                                                                            <  5:311637/148‑1 (MQ=32)                                             gATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCTGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGagcgta                                                                                                       <  4:102779/149‑1 (MQ=17)                                              aTGCAGATTGCGACTTCAGGAGGCCGAGCGGAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGagcgtag                                                                                                      >  1:32188/1‑149 (MQ=14)                                              aTGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAg                                                                                                                       <  1:316104/132‑1 (MQ=31)                                              aTGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAg                                                                                                                       >  2:316104/1‑132 (MQ=31)                                                                    ggcGAGCGATGTGCTTGCGGTGGGAGTTGACGGGACTGTATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCGGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGa                                                                                 <  8:83014/146‑1 (MQ=11)                                                                      cGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGcc                                                                              >  5:274413/1‑149 (MQ=32)                                                                      cGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGcc                                                                              >  5:207411/1‑149 (MQ=32)                                                                                    gCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAg                                                                                     <  1:303147/128‑1 (MQ=11)                                                                                    gCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAg                                                                                     >  2:303147/1‑128 (MQ=11)                                                                                         gggaggTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGAAGGCTTAGGTTACTTTg                                                           >  6:298030/1‑149 (MQ=21)                                                                                          ggaggTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTgg                                                          >  7:343040/1‑149 (MQ=34)                                                                                                                ggTCATGCGCTG‑‑GGCCCCTGGATGGGGCCTGCTGCGCGGTCCTCCGGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgccg                                    <  6:274413/148‑1 (MQ=255)                                                                                                                     aGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAgg                               >  6:225635/1‑149 (MQ=34)                                                                                                                      gcgcTG‑‑GGCCCCAGGTTGGGGCGTGCAGGGCGGTCCTCCCGGGAGCAAGCCGGGTGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGt                                                                  <  6:96286/113‑1 (MQ=11)                                                                                                                      gcgcTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCttgacgggcatccatgcccgtcacctcccttcgcaagccctgcgctcggcctcctgaagtcgcaatccgcggcgcctgggctatcgc                                                             >  1:83704‑M1/1‑31 (MQ=255)                                                                                                                      gcgcTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCttgacgggcatccatgcccgtcacctcccttcgcaagccctgcgctcggcctcctgaagtcgcaatccgcggcgcctgggctatcgc                                                             <  2:83704‑M1/118‑88 (MQ=255)                                                                                                                      gcgcTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGt                                                                  >  5:96286/1‑113 (MQ=35)                                                                                                                      gcgcTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAggg                              >  3:270952/1‑149 (MQ=34)                                                                                                                              ggCCCATGGTTGGGGCGTGCTGGGGGGTCCTCCGGGTAGCATGCCGGTTGTGTGGGTACCCCGGAGCGTAGCGTTGGGGCGGGATGAGGGTAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGaaa                        <  2:32188/149‑1 (MQ=11)                                                                                                                                ccccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAgg                      >  7:170385/1‑149 (MQ=34)                                                                                                                                   cAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGGAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTg                    >  1:297359/1‑148 (MQ=21)                                                                                                                                       aTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCCCGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAg               >  5:108561/1‑149 (MQ=21)                                                                                                                                       aTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAg               >  3:4/1‑149 (MQ=34)                                                                                                                                             ccTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCt         >  5:79612/1‑149 (MQ=34)                                                                                                                                               tGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGCCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTg        >  2:297078/1‑148 (MQ=25)                                                                                                                                                  aGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATc    >  7:124895/1‑149 (MQ=37)                                                                                                                                                    cgcttgacgggcatccatgcccgtcacctcccttcgcaagccctgcgctcggcctcctgaagtcgcaatccgcggcgcctgggctatcgcgcgcttagaagcaaaatcaaaagccgaagcgagagcgagagcgagagcgagagcgagag  <  1:136465‑M1/149‑147 (MQ=255)                                                                                                                                                    cgcgGTCCTCCCGGTAGAAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGt  <  2:297359/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGT  >  NC_002947/2085351‑2085644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.