New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3332939 | 45 (0.760) | 4 (0.070) | 4/250 | NT | 7.4% | coding (166/918 nt) | PP_2930 | L‑serine dehydratase |
? | NC_002947 | = 3332993 | 57 (1.000) | coding (112/918 nt) | PP_2930 | L‑serine dehydratase |
GCACCACCACCTTGGCGTCTTCCAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTA > NC_002947/3332792‑3333087 | gCACGACCACCTTGGCGTCTTCCAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGTCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAA < 4:205022‑M1/148‑1 (MQ=255) cTTGGCGTCTTCCAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGgcgc < 2:41044/149‑1 (MQ=255) ttCCAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAActgcgcggtgtaggccacgc > 8:289054‑M1/1‑129 (MQ=255) ccAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCAc < 4:307516/141‑1 (MQ=255) ccAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCAc > 3:307516/1‑141 (MQ=255) ccAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCgtg < 4:123532/148‑1 (MQ=255) ccAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCgt < 1:155749/147‑1 (MQ=255) ggTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGgtgt < 1:140235/149‑1 (MQ=255) cTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGc < 5:202339/147‑1 (MQ=255) cTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGc > 6:202339/1‑147 (MQ=255) cTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGt < 3:140817/149‑1 (MQ=255) cccGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGt > 2:169786/1‑144 (MQ=255) cccGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGt < 1:169786/144‑1 (MQ=255) gTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGttt > 8:168991‑M2/1‑146 (MQ=255) tttCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGttt < 5:90227‑M2/148‑4 (MQ=255) cGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAActgcgcggtgtaggccacgcctgcgaggtacaccacgcgcgtggcgcccggcactttgtg < 7:289054‑M1/148‑61 (MQ=255) ggTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTgaacg > 5:33481/1‑148 (MQ=255) acaacGGTCACCGGCACCCCCAGCTTGCGTCCGCCATAGTCGACTGCCAAACCGGCATTGCCACCTGACCAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGACTACACCCAGCAGTTTGAACTCACCGCa > 2:292515/4‑149 (MQ=255) acaacGGTCACCGGCACCCCCAGCTTGCCTCCCGCATAGGCGACTGCCAAACCGGCATTGCCACCTCACGAGGACACAAAGTGCCGGGCCCCCCGCGCGTGGTGTACCTCGAAGGCGTGGCCTACAACGCGCAGTTTGAACGAACCg > 6:289653/4‑147 (MQ=255) ccacGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTgaacga < 5:136509/142‑1 (MQ=255) ccacGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTgaacga > 6:136509/1‑142 (MQ=255) tCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAActgcgcggtgtaggccacgcctgcgaggtacaccacgcgcgtggcgcccggcactttgtgt > 7:185520‑M1/1‑73 (MQ=255) tCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAActgcgcggtgtaggccacgcctgcgaggtacaccacgcgcgtggcgcccggcactttgtgt < 8:185520‑M1/134‑62 (MQ=255) aCCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCa < 6:90227/148‑1 (MQ=255) ccGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGttt < 4:354027‑M2/127‑4 (MQ=255) ccGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAgg > 2:302058/1‑141 (MQ=255) ccGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAgg < 1:302058/141‑1 (MQ=255) ccGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAgg > 3:180993/1‑149 (MQ=255) ccGGCACCCACAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAgg > 5:377464/1‑149 (MQ=255) ccccAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTc > 6:187156/1‑93 (MQ=255) ccccAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTc > 4:134897/1‑147 (MQ=255) cTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGa < 4:180993/149‑1 (MQ=255) cTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGa < 6:377464/149‑1 (MQ=255) ttGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCa < 5:79990/125‑1 (MQ=255) ttGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCa > 6:79990/1‑125 (MQ=255) ggCATAGGCGACTGCCAAACCGGCATTGCCNCCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGagat > 1:32332/1‑149 (MQ=255) ggCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGatat > 6:303925/1‑149 (MQ=255) ggCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGatat > 1:26691/1‑149 (MQ=255) aGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGa > 4:307176/1‑135 (MQ=255) aGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGa < 3:307176/135‑1 (MQ=255) gCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGAcc > 1:241857/1‑149 (MQ=255) ccAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGgccgc > 2:158028/1‑148 (MQ=255) cAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGgccgcc > 6:241461/1‑148 (MQ=255) aaaCCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCaa > 3:163819/1‑149 (MQ=255) aTTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCg > 2:3957/1‑149 (MQ=255) cTGAAGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACATCGCACGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGACAGATATTACGACCGGCCGCCAACGACAGAGGGCgaga > 6:165263/1‑148 (MQ=255) tGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACt > 7:93625/1‑149 (MQ=255) aCGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAg < 7:223712/106‑1 (MQ=255) aCGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAg > 8:223712/1‑106 (MQ=255) gACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAg > 5:16028/1‑149 (MQ=255) gACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCCCAGGCGTGGCCTTCACCGCTCATTTTGAACGAACCGTAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAActtca < 5:258921/130‑5 (MQ=255) acacAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGtttgtgtcctcgtcaggtggcaatgccggtttggcagtcgcctatgccggacgcaagctgggggtgccggtga > 7:185520‑M2/1‑61 (MQ=255) acacAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGtttgtgtcctcgtcaggtggcaatgccggtttggcagtcgcctatgccggacgcaagctgggggtgccggtga < 8:185520‑M2/134‑74 (MQ=255) acacAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAgg < 2:241857/149‑1 (MQ=255) cacaAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGtttgtgtcctcgtcaggtggcaatgccggtttggcagtcgcctatgccggacgcaagctgggggtgccggtgaccgtggtgatacccg < 7:289054‑M2/148‑89 (MQ=255) cacaAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAggg < 4:163819/149‑1 (MQ=255) acaAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAgggg < 6:33481/149‑1 (MQ=255) caAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAggggg < 1:158028/149‑1 (MQ=255) aaactgcgcggtgtaggccacgcctgcgaggtacaccacgcgcgtggcgcccggcactttgtgtcctcgtcaggtggcaatgccggtttggcagtcgcctatgccggacgcaagctgggggtgccggtgaccgtggtgatacccgaaac > 8:168991‑M1/1‑3 (MQ=255) aaactgcgcggtgtaggccacgcctgcgaggtacaccacgcgcgtggcgcccggcactttgtgtcctcgtcaggtggcaatgccggtttggcagtcgcctatgccggacgcaagctgggggtgccggtgaccgtggtgatacccgaaa < 5:90227‑M1/148‑146 (MQ=255) aaactgcgcggtgtaggccacgcctgcgaggtacaccacgcgcgtggcgcccggcactttgtgtcctcgtcaggtggcaatgccggtttggcagtcgcctatgccggacgcaagctgggggtgccgg < 4:354027‑M1/127‑125 (MQ=255) aaaGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGCCAGCGGGCGCGACTCGATCAgggggg > 2:180240/1‑149 (MQ=255) aGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTa < 8:93625/149‑1 (MQ=255) | GCACCACCACCTTGGCGTCTTCCAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCGCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTA > NC_002947/3332792‑3333087 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |