New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3947913 =	24 (0.410)	3 (0.070)	3/202	NT	18.9%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3947998 =	7 (0.150)					coding (51/1797 nt)	PP_3483	type II secretion system protein

GGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT  >  NC_002947/3947773‑3947986                                                                                                                                             |                                                                           ggTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTTAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCgg                                                                    <  7:10918/149‑1 (MQ=255)  gTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCggg                                                                   <  3:271010/149‑1 (MQ=255)  cgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCggg                                                                   >  3:231‑M1/140‑149 (MQ=255)       atcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGc                                                              >  8:8216‑M1/135‑149 (MQ=255)            ctgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCt                                                         >  4:224831‑M1/130‑149 (MQ=255)             tgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCT‑c                                                       <  2:89101‑M1/21‑1 (MQ=255)               ctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTcgcg                                                                     <  4:190169‑M1/8‑1 (MQ=255)               ctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTcgcg                                                                     >  3:190169‑M1/127‑134 (MQ=255)                 cacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCT‑CCca                                                    <  4:130501‑M1/24‑1 (MQ=255)                  gggTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCcaca                                                  <  1:205625/149‑1 (MQ=255)                  acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCT‑CCcaca                                                  >  5:71737‑M1/124‑149 (MQ=255)                    aggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCT‑CCCACAgg                                                >  3:130501‑M1/122‑149 (MQ=255)                    aggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCT‑CCCACAgg                                                <  7:285499‑M1/28‑1 (MQ=255)                        gaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCT‑CCcaca                                                  >  2:81537‑M1/118‑143 (MQ=255)                        gaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCT‑CCcaca                                                  <  1:81537‑M1/26‑1 (MQ=255)                              cGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAg                                      <  3:216920/149‑1 (MQ=255)                              cGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAg                                      <  3:212133/149‑1 (MQ=255)                                 gggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCAt                                                                <  5:334513/121‑1 (MQ=255)                                 gggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCAt                                                                >  6:334513/1‑121 (MQ=255)                                         caggccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCt                           >  8:54229/1‑149 (MQ=255)                                            gccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCa                        >  8:63695/1‑149 (MQ=255)                                             ccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCAt                       <  7:54229/149‑1 (MQ=255)                                              caggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCCACAGGTACATCACAGGTCTGTGGGCTGCa                        <  1:38553/148‑1 (MQ=255)                                              caggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCa                        >  2:38553/1‑147 (MQ=255)                                                      ccAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCtg               <  7:63695/148‑1 (MQ=255)                                                       cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGc                         <  7:302026/137‑1 (MQ=255)                                                       cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGc                         >  8:302026/1‑137 (MQ=255)                                                         ggCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg            >  6:367057/1‑148 (MQ=255)                                                          ctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCCCAGGTCTGTGGGCTGCATACATCCTGTGGGa          >  8:285499‑M1/84‑149 (MQ=255)                                                          ctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg            <  5:44751‑M1/64‑1 (MQ=255)                                                              tCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑cc                                                      <  1:153880/101‑1 (MQ=255)                                                              tCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑cc                                                      >  2:153880/1‑101 (MQ=255)                                                              tCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg      <  5:367057/149‑1 (MQ=255)                                                              gacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg      >  6:44751‑M1/80‑149 (MQ=255)                                                                  gCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAt  <  8:223202/149‑1 (MQ=255)                                                                          tCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGc                         >  6:206447/1‑118 (MQ=255)                                                                          tCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGc                         <  5:206447/118‑1 (MQ=255)                                                                            gTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGc    >  6:110198/1‑137 (MQ=255)                                                                            gTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGc    <  5:110198/137‑1 (MQ=255)                                                                                                                                             |                                                                           GGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT‑CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAT  >  NC_002947/3947773‑3947986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.