New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586029	7 (0.120)	16 (0.300)	11/236	NT	47.5%	intergenic (+112/+103)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586109	29 (0.540)					intergenic (+192/+23)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

GCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GGTAAACCCGCTCCTACCAGGGA‑CGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGT  >  NC_002947/4585887‑4586099                                                                                                                                                |                                                                         gccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgg                                                                    <  5:298424‑M1/149‑7 (MQ=255)    gAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCTGGCCTCTtcgcgggta                                                                 <  5:96303‑M1/149‑10 (MQ=255)             gCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctc                                                        <  1:331944‑M1/149‑19 (MQ=255)              ccACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctc                                                        <  7:154911‑M1/148‑19 (MQ=255)                aCCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctccta                                                     >  6:185454‑M1/1‑128 (MQ=255)                       aaGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggga                                              <  3:104612‑M1/149‑29 (MQ=255)                        aGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggac                                             <  2:127613‑M1/149‑30 (MQ=255)                            ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtg                                         >  2:84142‑M1/1‑116 (MQ=255)                               aGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccactcctaccagggaccgtgccg                                      <  5:350489‑M1/149‑37 (MQ=255)                                gggTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctccaaccaggga                                              <  1:140693‑M1/140‑29 (MQ=255)                                gggTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctccaaccaggga                                              >  2:140693‑M1/1‑112 (MQ=255)                                        cACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtgccggcc                                   <  5:167078‑M1/143‑40 (MQ=255)                                        cACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtgccggcc                                   >  6:167078‑M1/1‑104 (MQ=255)                                         aCGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATg                            <  3:261279/149‑1 (MQ=39)                                                        aCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctgg             <  1:104194‑M1/149‑62 (MQ=255)                                                        aCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTg              <  4:359076/148‑1 (MQ=39)                                                                    cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg    <  5:185454/146‑1 (MQ=38)                                                                    cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGt  <  1:84142/148‑1 (MQ=38)                                                                            cATTGAAAGGTTGAGGATGACCGGGTGGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctg              >  1:192756‑M1/1‑69 (MQ=255)                                                                            cATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctg              <  2:192756‑M1/128‑61 (MQ=255)                                                                                          ggATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTa           <  4:330911/117‑1 (MQ=37)                                                                                           gATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGt  >  3:131522/1‑125 (MQ=37)                                                                                           gATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGt  <  4:131522/125‑1 (MQ=37)                                                                                                                                                |                                                                         GCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGT‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GGTAAACCCGCTCCTACCAGGGA‑CGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGT  >  NC_002947/4585887‑4586099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.