| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5125112 | 19 (0.320) | 4 (0.090) | 4/206 | NT | 16.6% | intergenic (+86/‑96) | PP_4511/PP_4512 | AraC family transcriptional regulator/DMT superfamily permease |
| ? | NC_002947 | = 5125139 | 25 (0.530) | intergenic (+113/‑69) | PP_4511/PP_4512 | AraC family transcriptional regulator/DMT superfamily permease | |||||
CGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGG > NC_002947/5124965‑5125260 | cgATGCTGCGGGCGTCCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑a < 7:32786/149‑1 (MQ=255) gtgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAAtgttg > 6:353502/1‑149 (MQ=255) tgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAAtgttgt < 8:62151/149‑1 (MQ=255) tACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTtgtg < 2:333415/148‑1 (MQ=255) tACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTtgtg < 4:214985/148‑1 (MQ=255) acCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACG‑ATGCCCC‑‑CGCCGGAATTTTGTGCaa > 6:98303/1‑148 (MQ=255) ggCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctg > 3:316038‑M2/1‑144 (MQ=255) cTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgtag > 5:353502‑M2/1‑142 (MQ=255) tttGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgta < 2:231774‑M2/147‑7 (MQ=255) tGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgta > 1:231774‑M2/1‑140 (MQ=255) gagaGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgta < 8:305889‑M2/139‑7 (MQ=255) gagaGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgta > 7:305889‑M2/1‑133 (MQ=255) gCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgg < 3:104190‑M1/137‑41 (MQ=255) gCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgg > 4:104190‑M1/1‑97 (MQ=255) tGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGGAAAACCGGTAGGAGCGGGTTTACCCGCGAAAGGGCCg > 5:198857/1‑149 (MQ=255) aCAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTTAACCCGCTCCTACAGG‑ATGGCCC‑‑CGCCTGAATGTTGTGGAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGc > 7:189743/1‑149 (MQ=255) aCAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCCGACCTACAGG‑ATGCCCCTATAGCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTAACCGCGAAAGGGCCg > 1:119413/1‑149 (MQ=255) gcTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACCGG‑ATGCCCC‑‑CGCCTGAATGTTGGGCAAACCCTGAAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCt < 5:98303/148‑1 (MQ=255) gACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttac > 4:16174‑M2/1‑101 (MQ=255) gACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttac < 3:16174‑M2/120‑20 (MQ=255) gACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCCCAACTACAGG‑ATGCCCC‑‑CCCCAGAATGTTGTGGAAAACCAGTAAGAGCGGGGTTACCCGCGAAAAGGCCGGCACAGCCGGTa > 6:110871/1‑146 (MQ=255) aGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgtaggagcgg < 8:172971‑M2/111‑14 (MQ=255) ccTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTGCGCGGTAAAACCCGCTCCTCCCGG‑AGGCCCC‑‑CGCCTCAATTTTTTGCAAAACCTGTAGGAGCGGTTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGAc < 3:341046/149‑1 (MQ=38) gCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctg > 3:42543‑M1/1‑53 (MQ=255) gCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctg < 4:42543‑M1/84‑32 (MQ=255) cTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTTAAACCGCTCCTAACGG‑ATGACCC‑‑CCCCGGGAAGTTGTGGAAAACCAGTATGATCGGGTTTAACCGCGAAAGGGCCGGCCCTGCCGGTTGGGATATCCATCAACGACccacc > 2:224098/1‑147 (MQ=255) cTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCAt < 5:110871/149‑1 (MQ=255) ctttgcctttgcCGGCCCCTTCGCGGGTAAACCCCCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCAGTATGAGCGGGTTTACCCGCGAAATGGCCGGCACAGCCTGTATAGATCTCCATCAAGGACCCACCATGAaacac > 6:379741/1‑149 (MQ=38) ccGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCt < 2:119413/149‑1 (MQ=255) cGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTc < 5:379741/149‑1 (MQ=255) ggagcgGGTTTACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCAc > 8:247719/4‑149 (MQ=255) gTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtc < 3:16174‑M1/120‑102 (MQ=255) gTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtc > 4:16174‑M1/1‑19 (MQ=255) ccGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattct < 8:172971‑M1/111‑99 (MQ=255) ccGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgc < 3:104190‑M2/137‑98 (MQ=255) ccGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgc > 4:104190‑M2/1‑40 (MQ=255) ccGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgc > 3:215148/1‑149 (MQ=255) gCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgcgc > 1:322946/1‑149 (MQ=255) cTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgcaaag > 5:353502‑M1/1‑7 (MQ=255) tACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgcaaa < 2:231774‑M1/147‑142 (MQ=255) tACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctc < 8:305889‑M1/139‑134 (MQ=255) tACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctc > 7:305889‑M1/1‑6 (MQ=255) tACAGGttttgcacaacattcaggcgggggcatacctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgca > 1:231774‑M1/1‑6 (MQ=255) cAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgcaaagcc > 3:316038‑M1/1‑4 (MQ=255) cAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagc < 4:42543‑M2/84‑54 (MQ=255) cAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagc > 3:42543‑M2/1‑31 (MQ=255) cAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttctt < 2:322946/149‑1 (MQ=255) cAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttctt > 6:206373/1‑149 (MQ=255) g‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCgg > 1:327701/1‑149 (MQ=255) | CGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑ATGCCCC‑‑CGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGG > NC_002947/5124965‑5125260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |