| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5870261 = | 31 (0.530) | 6 (0.130) | 6/200 | NT | 24.5% | intergenic (+22/+112) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator |
| ? | NC_002947 | 5870354 = | 13 (0.290) | intergenic (+115/+19) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator | |||||
CAGCCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCA > NC_002947/5870113‑5870369 | cagccagAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCgg < 8:249995/149‑1 (MQ=255) gccagAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGc < 2:189362/149‑1 (MQ=255) gAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCctct > 8:188526/1‑149 (MQ=255) tgctggccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTcgc < 1:291082‑M1/11‑1 (MQ=255) tgctggccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTcgc < 3:125084‑M1/11‑1 (MQ=255) tgctggccgaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaacactgtgagggtgatgctgtttgtgccGGCCTCTTcgc < 6:128786‑M1/11‑1 (MQ=255) cGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCgg > 5:130900/1‑149 (MQ=255) cGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCgg < 8:186565/149‑1 (MQ=255) gaggccttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAAc > 2:291082‑M1/131‑149 (MQ=255) gggCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAAccc < 6:213161/149‑1 (MQ=255) cttgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTgaaccccct < 7:78997‑M1/24‑4 (MQ=255) tgagccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTcc < 1:146662‑M1/26‑1 (MQ=255) gCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCt < 6:181537/149‑1 (MQ=255) acaGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTa > 6:364533/1‑148 (MQ=255) ccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTTCACccgcgaa > 8:163579‑M1/120‑142 (MQ=255) ccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTTCACccgcgaa < 7:163579‑M1/26‑4 (MQ=255) ccatgacaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTAc < 1:233397‑M1/29‑1 (MQ=255) aGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaa > 3:186782/1‑149 (MQ=255) acaacccgcaggttatccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGc > 2:233397‑M1/115‑149 (MQ=255) tgtgGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTgg < 5:364533/148‑1 (MQ=255) tCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑ccc > 6:308375/1‑148 (MQ=255) ccacagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑ccc < 6:150199‑M1/48‑1 (MQ=255) gggCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGa < 7:188526/148‑1 (MQ=255) gggCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGAt < 5:308375/149‑1 (MQ=255) gggCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGAt > 7:11156/1‑149 (MQ=255) acagctcgctgcaactggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGAt < 6:89146‑M1/53‑1 (MQ=255) gCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGTGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGAtgt < 6:130900/149‑1 (MQ=255) gCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGAtgt > 6:23581/1‑149 (MQ=255) gCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGAtgt > 8:59141/1‑149 (MQ=255) aGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATgtgtgt < 7:59141/149‑1 (MQ=255) actggccctgaagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGt > 5:89146‑M1/84‑149 (MQ=255) aGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGc < 8:11156/149‑1 (MQ=255) cgcAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGCgg > 5:185509/1‑149 (MQ=255) cgcAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGCgg < 4:186782/149‑1 (MQ=255) gcAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGCggg < 3:193391/149‑1 (MQ=255) aagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGCggg > 5:150199‑M1/74‑148 (MQ=255) aagaaccttgggttggcgcggatgattgggcctggggctaataaaaccctgtgagggtgatgctgtttgtgccGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGCgg > 4:125084‑M1/74‑147 (MQ=255) aGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGCGGGtt < 5:23581/149‑1 (MQ=255) ttttGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCgg > 5:323156/1‑74 (MQ=255) ttttGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCgg < 6:323156/74‑1 (MQ=255) ttttGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGAt > 2:339955/1‑114 (MQ=255) ttGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAaga < 6:185509/148‑1 (MQ=255) tttGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAAACCGCTACTAAAACGGCCAGGGTCCAA‑CCCCAGATGTGTGTAAGTGGTAGGAGCGGGTTAACCCGCGAAGATGCCGGcaca > 4:151303/1‑148 (MQ=255) aaTTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGGAACCCCGGCAAAAACCGCCAGGGTGCAA‑CCCCCGAATTTTTTTCGTGGTTTGTGCGGGTTGACCCCCGGAGAGGGCGGCACAAACACCAtaa > 2:196149/1‑147 (MQ=255) tCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAACCCCCAGATGTGTGTACGTGGTAGGAGCggg < 1:216614/102‑1 (MQ=255) tCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGa < 5:249605/78‑1 (MQ=255) tCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGa > 6:249605/1‑78 (MQ=255) tCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGCggg > 2:216614/1‑101 (MQ=255) | CAGCCAGAATTACGGGACCCGGGCGAGCACAGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCAA‑CCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAAACAGCATCA > NC_002947/5870113‑5870369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |