New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5903769	49 (0.830)	3 (0.060)	3/238	NT	5.9%	intergenic (+25/+82)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5903831	51 (0.940)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease

CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCA  >  NC_002947/5903622‑5903911                                                                                                                                                      |                                                                                                                                                cATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCAt                                                                                                                                                <  5:149041/149‑1 (MQ=255) cATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCAt                                                                                                                                                >  6:200906/1‑149 (MQ=255)              aGGAAGAGTGTGTGGTTCATGTTGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTACca                                                                                                                                     >  7:235424/1‑147 (MQ=255)                gAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAgg                                                                                                                                 <  4:298826/149‑1 (MQ=255)                 aaGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAggg                                                                                                                                <  7:127230/149‑1 (MQ=255)                 aaGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAggg                                                                                                                                <  2:285716/149‑1 (MQ=255)                   cagTGTGTGGTTCATGTAGCCCGGTACAATGGTTCCAATCCCTTGAGGGCTGGATTTGTCAGAACTATCAGGGACTATACCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAgg                                                                                                                                 <  1:296060/147‑1 (MQ=255)                         gtgGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTcacca                                                                                                                         >  2:264050/1‑148 (MQ=255)                         gtgGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTcacca                                                                                                                         >  2:48927/1‑148 (MQ=255)                            gTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGCGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAAc                                                                                                                     <  7:152176/149‑1 (MQ=255)                                 tGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTg                                                                                                                 >  6:130147/1‑148 (MQ=255)                                   tAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAg                                                                                                              >  5:105708/1‑149 (MQ=255)                                          gTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCtgt                                                                                                         >  4:259635/1‑147 (MQ=255)                                               ttgttgCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTcc                                                                                                  <  1:48927/149‑1 (MQ=255)                                                  ttgCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTACCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCtg                                                                                               >  3:68913/1‑149 (MQ=255)                                                     ccAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCtgtg                                                                                             <  3:58707/148‑1 (MQ=255)                                                     ccAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTgg                                                                                            <  8:184588/149‑1 (MQ=255)                                                      cAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCCCGGGCAAGCCCCCTACCACAGGGCTGACCACAACCCGGAAGGCGGTGAGGTCCCAGTgg                                                                                            >  7:233654/1‑148 (MQ=255)                                                            cTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCAcgcccgctcccacagggacctcacagccttcagggttgtggtgagccctgtgg                                                                                            >  3:272338‑M1/1‑89 (MQ=255)                                                            cTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTgg                                                                                            >  7:160766/1‑142 (MQ=255)                                                            attGTGGTCTGGATTGTTCAGTAGTATCAGTTAATAT‑‑CCACATTGGGATGCGTTATGGCTTTGAATCGGTGATGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTgg                                                                                            <  8:160766/141‑1 (MQ=255)                                                             ttGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTgg                                                                                            >  6:32800/1‑141 (MQ=255)                                                             ttGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTgg                                                                                            <  5:32800/141‑1 (MQ=255)                                                                    cTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCAcgcccgctcccacagggacctcacagccttcagggttgtggtgagcc                                                                                                  >  4:121646‑M1/1‑81 (MQ=255)                                                                    cTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCAcgcccgctcccacagggacctcacagccttcagggttgtggtgagcc                                                                                                  <  3:121646‑M1/128‑48 (MQ=255)                                                                    cTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGCG‑CGGGCGtgcccg                                                                            <  4:221206‑M2/149‑7 (MQ=255)                                                                    cTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGtgcccg                                                                            <  4:225956‑M2/149‑7 (MQ=255)                                                                         ttGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGATGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGaaa                                                                       <  8:235424/149‑1 (MQ=255)                                                                          tGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAg                                                                                                      >  3:98388/1‑118 (MQ=255)                                                                          tGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAg                                                                                                      <  4:98388/118‑1 (MQ=255)                                                                           ggTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGGGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAg                                                                      <  3:259635/148‑1 (MQ=255)                                                                            gtcttatgTATCAGGGAATTT‑‑CTATATTGTGATGCGTTATGTGTTTGAAGGGGTGTTGTAGGCTTCGGGGGCATGCCGGCTCCCTCAGGGCTCACCACAACCCTGATGGCTGTGAGGTCCCTGTGGGTG‑GGGGGGTGCCCGCGAAAgg                                                                     <  4:246643/141‑1 (MQ=255)                                                                            gTCAGATTTATCAGGCATTAT‑‑CCACATTGGTATGCGGTTTGGCTTTTAATCGGTGCTGGTGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTTAAGGCTGTGTGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAgg                                                                     <  4:68913/148‑1 (MQ=37)                                                                            gTCAGAAGTATCAGGGACTTT‑‑CCCCTTTGGTTTGCGGTATGGCTTTGAATCGGTTCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAgg                                                                     <  8:38115/148‑1 (MQ=38)                                                                               aGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCCCGGGCATGCCCGCTACCACAGGGCGCACCACAACCCGGAAGGCAGTGAGGTCCCGGTGGGAG‑CGGGCGTGCCCGCGAAAGGGc                                                                   >  1:276319/1‑147 (MQ=255)                                                                                 aaGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                                  >  2:124027/1‑83 (MQ=255)                                                                                    tATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGt                                                              >  3:259363/1‑147 (MQ=255)                                                                                      tCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAg                                                           <  6:105708/148‑1 (MQ=255)                                                                                           gACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCAACACCACCCGGAAGGCTGTGAGGTCCCGGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCACGCCgcc                                                     >  4:117115/1‑147 (MQ=39)                                                                                             cTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCATGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGc                                                   <  1:264050/149‑1 (MQ=255)                                                                                              tAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCa                                                  <  3:225956/149‑1 (MQ=255)                                                                                                t‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCa                                                  <  3:221206/147‑1 (MQ=255)                                                                                                  ctcactTTGGGTTGCGGTTTGGCTTTGAATCTGTGCTGGTGCCTTCGCGGGCATGCCGGCTCCCACTGGGCTCACCACAACCCTTAAGGCTGGGAGGTCCCTGTGGTTG‑CGGGGGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAg                                                 <  8:65036/146‑1 (MQ=255)                                                                                                    cacaTTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCCGGCCGACGCAGCCa                                              >  8:259147/1‑149 (MQ=255)                                                                                                     acaTTGGGATGCGGTATGGCTTTGAATCAGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCAGTGGGAG‑CGGGCGTGCCCGCGAAACGGCCAGGTCATGCCGACGCAg                                                 >  7:65036/1‑145 (MQ=255)                                                                                                         tGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGtgc                                                                               >  1:146845‑M2/1‑108 (MQ=255)                                                                                                         tGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGtgc                                                                               <  2:146845‑M2/111‑4 (MQ=255)                                                                                                            gATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGcc                                      >  1:234989/1‑149 (MQ=255)                                                                                                             aTGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATTCCCCCACCCACACGGCTCACCCCAACCCAGAACGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCACGTCACGCCGACGCACCCACCAGCGCCg                                     >  6:142791/1‑149 (MQ=255)                                                                                                                       gCTTTGAATCGGTGCTGGAGCCTTCGCGGGCCTTCCCCCAACCCCAGGGGGCACCCCAACCCGGAAGGCGGGGGGGTGCCGGGGGGGGCCGGGCGTGCCC‑CGAAAGGGCCCGGTCAGGCCGACCCCCCCACCAGCGCCCGGCGCGTGAc                           >  2:205185/1‑149 (MQ=255)                                                                                                                                     cgggAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGGGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGaa              <  1:205185/146‑1 (MQ=255)                                                                                                                                      tGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCGGAAGGCTGTGAGGTCCCTGTGGGCG‑CGGGCGTGCCCGCGCAAGGGCCAGGTCAGGCCGCCGCCGCCACCTGCGCCGGGCGCTTGCCCTGCGGCTGCGAAGc            >  6:109499/1‑149 (MQ=39)                                                                                                                                        gAGCCTTCGCGGGCAGGCCCGCTCCCACAGGGCGCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGGGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGt          <  5:142791/149‑1 (MQ=255)                                                                                                                                         aGCCTTCGCGGGCATGCCCGCTCCCACCGGGCTCACCACAACCCTGAAGGCTGTGAGGGCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGGCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGtt         <  5:200906/149‑1 (MQ=255)                                                                                                                                         aGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGATGGCTGTGAGGTCCCTGTGGGAG‑GGGGGGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGtt         <  2:276319/149‑1 (MQ=255)                                                                                                                                             ttCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCGTGACCTGCGGCTGCGAAGCGTTGGCt     >  8:301130/1‑149 (MQ=255)                                                                                                                                                gcgGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTgc   <  5:109499/148‑1 (MQ=255)                                                                                                                                                gcgGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCGGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTgc   <  5:130147/148‑1 (MQ=255)                                                                                                                                                 cgGGCAcgcccgctcccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccag  <  4:225956‑M1/149‑144 (MQ=255)                                                                                                                                                 cgGGCAcgcccgcgcccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccag  <  4:221206‑M1/149‑144 (MQ=255)                                                                                                                                                    gCAcgcccgctcccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatccca                                     <  2:146845‑M1/111‑109 (MQ=255)                                                                                                                                                    gCAcgcccgctcccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcatgcccgcgaaggctccagcaccgattcaaagccataccgcatccca                                     >  1:146845‑M1/1‑3 (MQ=255)                                                                                                                                                      |                                                                                                                                                CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTAT‑‑CCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAG‑CGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCA  >  NC_002947/5903622‑5903911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.