New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 142705	64 (1.090)	3 (0.050)	3/244	NT	5.3%	coding (649/822 nt)	PP_0134	hypothetical protein
	?	NC_002947	= 142750	47 (0.840)					coding (694/822 nt)	PP_0134	hypothetical protein

CCAAGGCGCGGGAAACACCGGCGGGCGCGCCAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGACCAAGGTGGAAGGCTGATCGTGCAATTCGCACGACCA  >  NC_002947/142607‑142898                                                                                                                                                |                                                                                                                                                     ccAAGGCGCGGGAAACACCGGCGGGCGCGCCAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGATATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGtgcgg                                                                                                                                                 <  2:109030‑M2/149‑6 (MQ=255)   aaGGCGCGGGAAACACCGGCGGGCGCGCCAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGGCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGtgcggct                                                                                                                                               <  5:323085‑M2/149‑8 (MQ=255)       cgcgGGAAACACCGGCGGGCGCGCCAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCg                                                                                                                                           <  3:149210/149‑1 (MQ=255)        gcgGGAAACACCGGCGGGCGCGCCAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCgg                                                                                                                                          >  7:345947/1‑149 (MQ=255)          gggAAACACCGGCGGGCGCGCCAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGc                                                                                                                                        <  4:360544/149‑1 (MQ=255)           ggAAACACAGGCGGGCGCGCCAATCAGGCCGCAGACAAGCTACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGc                                                                                                                                        >  4:76815/1‑148 (MQ=255)             aaaCACCGGCGGGCGCGCCAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAg                                                                                                                                     <  4:175791/149‑1 (MQ=255)              aaCACCGGCGGGCGCGCCAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTCAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAgg                                                                                                                                    <  2:347953/149‑1 (MQ=255)                              ccAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCa                                                                                                                    <  6:87432/149‑1 (MQ=255)                              ccAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCa                                                                                                                    <  3:104750/149‑1 (MQ=255)                               cAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGa                                                                                                                       >  1:293142/1‑145 (MQ=255)                               cAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGa                                                                                                                       <  2:293142/145‑1 (MQ=255)                               cAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAg                                                                                                                      >  2:122866/1‑146 (MQ=255)                                      gCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCa                                                                                                            >  5:278307/1‑149 (MQ=255)                                         gCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAgg                                                                                                                                    >  4:279791/1‑122 (MQ=255)                                         gCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAgg                                                                                                                                    <  3:279791/122‑1 (MQ=255)                                              cAAGCGACATCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTg                                                                                                    <  4:251234/149‑1 (MQ=255)                                                  cGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTg                                                                                                    >  3:241130/1‑145 (MQ=255)                                                          ggATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCgg                                                                                        >  6:216879/1‑149 (MQ=255)                                                             tcatcGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCa                                                                                      >  3:254880/1‑148 (MQ=255)                                                               atcGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAat                                                                                   >  3:283186/1‑149 (MQ=255)                                                                tcGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCgg                                                                                        >  3:313270/1‑143 (MQ=255)                                                                tcGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCgg                                                                                        <  4:313270/143‑1 (MQ=255)                                                                  gACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGc                                                                                                        >  7:45254/1‑125 (MQ=255)                                                                  gACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGc                                                                                                        <  8:45254/125‑1 (MQ=255)                                                                   aCAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAatcatc                                                                               <  6:311325/149‑1 (MQ=255)                                                                   aCAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAatcatc                                                                               <  3:76815/149‑1 (MQ=255)                                                                     aaGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCg                                                                              >  5:15007/1‑148 (MQ=255)                                                                     aaGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCg                                                                              <  6:15007/148‑1 (MQ=255)                                                                            agagCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCAt                                                                                                           <  2:228676/112‑1 (MQ=255)                                                                            agagCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCAt                                                                                                           >  1:228676/1‑112 (MQ=255)                                                                             gagCAGTTATGGGTTGAGGCTCAACTTCGATGGCCTGATCCTGAAGGTGGCGAGCTATGGAGGCATGGTGGGGCTCTCGGGGGATGTGGTCAGCGAGGTGCAGAAAACGTTCGCCGTGGAGATCGCCCGGCATATCATCGGCGTaggtg                                                                     <  4:254880/149‑5 (MQ=255)                                                                             gagCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACggg                                                                     <  6:278307/149‑1 (MQ=255)                                                                                     aTCGCTTCAGCCGCAACCTCGATGACCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCAGTGGAGATCGCCAGGCAAATCATCGGCGTACGGGGCGTGGAt                                                             >  7:169786/1‑149 (MQ=255)                                                                                       cGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGtgcggctgaagcgataactgctctggatcttgtcgatgatccagctgtcgcttggctgcggcccgattggcgcgcccgccggtgtttcccg                                                           <  8:252500‑M2/149‑92 (MQ=255)                                                                                         cTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGtgcggctgaagcgataactgctctggatcttgtcgatgatccagctgtcgcttggctgcggcccgattggcgcgcccgccggtgtttcccgcg                                                         <  2:1523‑M2/149‑94 (MQ=255)                                                                                            cAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGGCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGGGGATGCTGAc                                                       <  1:109030/148‑1 (MQ=255)                                                                                                cGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACctgct                                                  >  1:158812/1‑149 (MQ=255)                                                                                                 gCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACctgct                                                  >  4:351896/1‑148 (MQ=255)                                                                                                  cAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACct                                                     >  7:326263/1‑144 (MQ=255)                                                                                                  cAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACct                                                     <  8:326263/144‑1 (MQ=255)                                                                                                         gATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTcgc                                         <  8:345947/149‑1 (MQ=255)                                                                                                          aTGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTcgcg                                        <  4:241130/149‑1 (MQ=255)                                                                                                              cctgaacctgaaGGTGGCCAGCGAAGCAGGCATGGtgcggctgaagcgataactgctctggatcttgtcgatgatccagctgtcgcttggctgcggcccgattggcgcgcccgccggtgtttcccgcgccttggccatggcggcggtat                                    >  7:252500‑M2/1‑35 (MQ=255)                                                                                                               ctgaacctgaaGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGAcc                                     >  8:70829/1‑147 (MQ=255)                                                                                                               ctgaacctgaaGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGAcc                                     >  3:117149/1‑147 (MQ=255)                                                                                                                    cctgaaGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGACCAAGGTg                               >  7:188069/1‑148 (MQ=255)                                                                                                                     ctgaaGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGACCAAGGTgg                              >  7:273197/1‑148 (MQ=255)                                                                                                                        aaGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGACCAAGGTGGAAgg                          <  4:283186/149‑1 (MQ=255)                                                                                                                         aGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGACCAAGGTGGAAGGc                         <  7:70829/149‑1 (MQ=255)                                                                                                                                cAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGACCAAGGTGGAAGGCTGATCGt                  >  3:229696/1‑149 (MQ=255)                                                                                                                                 aGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGACCAAGGTGGAAGGCTGATCGTg                 <  6:323085/149‑1 (MQ=255)                                                                                                                                       gccggCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGACCAAGGTGGAAGGCTGATCGTGCAATTc           <  7:278421/146‑1 (MQ=255)                                                                                                                                           gCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTTACCTGCTGAAAGTCGCGACCAAGGTGGAAGGCTGATCGTGCAATTCGCAc       <  1:122866/149‑1 (MQ=255)                                                                                                                                                gTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGACCAAGGTGGAAGGCTGATCGTGCAATTCGCACGACca  >  6:78061/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     CCAAGGCGCGGGAAACACCGGCGGGCGCGCCAATCGGGCCGCAGCCAAGCGACAGCTGGATCATCGACAAGATCCAGAGCAGTTATCGCTTCAGCCGCAACCTCGATGGCCTGAACCTGAAGGTGGCCAGCGAAGCAGGCATGGTGCGGCTCTCGGGCGAGGTGGTCAGCGCGGAGCAGAAAACCATCGCCGTGGAGATCGCCCGGCAAATCATCGGCGTACGGGGCGTGGATGCTGACCTGCTGAAAGTCGCGACCAAGGTGGAAGGCTGATCGTGCAATTCGCACGACCA  >  NC_002947/142607‑142898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.