| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 499202 | 14 (0.240) | 9 (0.160) | 9/240 | NT | 32.7% | intergenic (+46/‑250) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 499271 | 24 (0.440) | intergenic (+115/‑181) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein | |||||
TACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTT > NC_002947/499130‑499417 | tACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAAAGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTAGCGGGCCTGCCCgctccca < 7:181861‑M2/149‑8 (MQ=255) cGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCgctcccaca > 7:349419‑M2/1‑140 (MQ=255) aacaAGCTTATCTGTTTGCTACATACGGGTGCCCTAAACTTGCCGAAGCCTTTGTGGTAGCGGGCATGCCCGCTAACGGGCCTGGCCTGCTTATCTCTTTGGCTGAGCGGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTgg < 8:181861/148‑1 (MQ=37) gACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATTCCCGCGAACGGGCCTGGCCTGCTGATATCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTAGTGGTTGGGTCGCAAGGGCAttg > 3:215869/1‑148 (MQ=39) aTACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCgcgaa > 4:288927‑M2/1‑108 (MQ=255) aTACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCgcgaa < 3:288927‑M2/113‑6 (MQ=255) gcgggCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATc > 6:184577/4‑149 (MQ=255) ccGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtc < 3:213263‑M2/103‑43 (MQ=255) ccGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtc > 4:213263‑M2/1‑61 (MQ=255) cgAACGGGCCTGGCCGGCTGATCTCTATGGCTTAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGg‑atg < 4:215869/149‑1 (MQ=255) aCGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagc < 6:285276‑M2/147‑93 (MQ=255) gggCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATgg > 1:130310/1‑148 (MQ=255) gcctggcctgCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCAt > 1:225125/1‑149 (MQ=255) gctgATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑atgatg < 8:58212/136‑1 (MQ=255) gctgATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑atgatg > 7:58212/1‑136 (MQ=255) tctATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTAccccc > 3:49431/1‑148 (MQ=255) tATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTAccccgatt > 7:73274/1‑145 (MQ=255) gCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTc < 5:184577/149‑1 (MQ=255) gCTGAGCCGGCCTCTTCGCGGGCAGGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTc < 2:197678/149‑1 (MQ=255) tGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCgg > 5:8469/1‑149 (MQ=255) gAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATtctct > 5:199349/1‑129 (MQ=255) gAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATtctct < 6:199349/129‑1 (MQ=255) aGCAGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCggg < 1:204107/148‑1 (MQ=255) ggCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCtt > 4:217113/1‑149 (MQ=255) ccTCTTCGCGGGCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtg > 5:285276‑M2/1‑19 (MQ=255) ccTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGc < 3:217113/149‑1 (MQ=255) tctTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCAGAGGGAATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCg > 1:308875/1‑149 (MQ=255) ttCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑atgatg > 5:237827/1‑109 (MQ=255) ttCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑atgatg < 6:237827/109‑1 (MQ=255) ttCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGt < 2:130310/147‑1 (MQ=255) cgggGGAATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgc > 1:197678‑M2/1‑13 (MQ=255) gcgGGCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctg > 5:62004‑M2/1‑12 (MQ=255) cgGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCtcttc > 8:67294/1‑149 (MQ=255) gggCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgat < 3:311278‑M2/149‑140 (MQ=255) ggCATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgatg < 6:149628‑M2/149‑141 (MQ=255) cATGCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcagcttctgcatcaggcgtgccttgtgggtgctgatggt > 6:30828‑M2/1‑7 (MQ=255) cATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTAct > 3:183662/1‑149 (MQ=255) gCCCgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgatggtctt < 2:304925‑M2/149‑146 (MQ=255) cccGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCgg > 4:339411/1‑125 (MQ=255) cccGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCgg < 3:339411/125‑1 (MQ=255) ccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgatggtcttgc < 7:85158‑M2/149‑148 (MQ=255) ccgctcccacataggcttcggcaagtttcgggcacccgtatgtcgcaatcagatcagcttgtgctccatggcgtacttcaccagctccgccagcgagttcactttcaacttctgcatcaggcgtgccttgtgggtgctgatggtcttgc < 2:111861‑M2/149‑148 (MQ=255) | TACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGG‑ATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTT > NC_002947/499130‑499417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |