New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1857897	47 (0.800)	4 (0.070)	3/242	NT	8.6%	coding (1076/2259 nt)	PP_1661	dehydrogenase
	?	NC_002947	= 1857926	41 (0.740)					coding (1105/2259 nt)	PP_1661	dehydrogenase

GGCCCAGGGCAAGCGCTACGTGATCGCCGCCCACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGCGTATCGAAATCGGCAACGAGGGCTGGAA  >  NC_002947/1857784‑1858074                                                                                                                                               |                                                                                                                                                     ggCCCAGGGCAAGCGCTACGTGATCGCCGCCCACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTacctgg                                                                                                                                                >  2:174106‑M2/1‑143 (MQ=255)        ggCAAGCGCTACGTGATCGCCGCCCACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTgggg                                                                                                                                         >  2:105117/1‑149 (MQ=255)                cTACGTGATCGCCGCCCACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGc                                                                                                                                 >  1:158072/1‑149 (MQ=255)                      gATCGCCGCCCACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAg                                                                                                                           >  1:242653/1‑149 (MQ=255)                         ggccgccCAGGCTATCTAAACACGCAAGCTGCTGCTCAACTCCATCGGCCCCAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCAAGGAATTGGCTTACAACCCGGTGAACCTGGCCT‑GGGCCTGATGCCCGAAGGCaa                                                                                                                       <  8:41145/148‑1 (MQ=255)                          gccgccCACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTacctg                                                                                                                                                 <  7:290259‑M2/123‑6 (MQ=255)                          gccgccCACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTacctg                                                                                                                                                 >  8:290259‑M2/1‑118 (MQ=255)                          gccgccCACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCaa                                                                                                                       <  1:297879/149‑1 (MQ=255)                           ccgccCACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAg                                                                                                                      >  1:97860/1‑149 (MQ=255)                              cccACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCg                                                                                                                   >  6:268973/1‑149 (MQ=255)                                     gATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTcc                                                                                                            >  7:151293/1‑149 (MQ=255)                                             cacCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCgg                                                                                                    <  8:151293/149‑1 (MQ=255)                                              cccGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCggg                                                                                                   <  8:303379/148‑1 (MQ=255)                                              acCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCaa                                                                                                                       >  6:41537/1‑129 (MQ=255)                                              acCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCaa                                                                                                                       <  5:41537/129‑1 (MQ=255)                                              acCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCggg                                                                                                   >  4:214099/1‑149 (MQ=255)                                               ccGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCTGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCgggg                                                                                                  <  5:259278/149‑1 (MQ=255)                                               ccGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCgggg                                                                                                  <  5:12989/149‑1 (MQ=255)                                                 gAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGc                                                                                                <  5:268973/149‑1 (MQ=255)                                                 gAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGc                                                                                                >  5:281749/1‑149 (MQ=255)                                                  aaGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGcc                                                                                               <  2:242653/149‑1 (MQ=255)                                                  aaGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGcc                                                                                               <  4:49974/149‑1 (MQ=255)                                                        ctgctCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGt                                                                                          <  2:158072/148‑1 (MQ=255)                                                                cTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTGTACCTCgg                                                                                 <  4:142378/149‑1 (MQ=255)                                                                  ccATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCggg                                                                                >  1:160608/1‑148 (MQ=255)                                                                   cATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGa                                                                              >  5:139216/1‑149 (MQ=255)                                                                        gCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAg                                                                         >  5:56310/1‑149 (MQ=255)                                                                           cGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGAc                                                                      <  2:160608/149‑1 (MQ=255)                                                                                aGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCg                                                                                  >  7:153656/1‑132 (MQ=255)                                                                                aGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCg                                                                                  <  8:153656/132‑1 (MQ=255)                                                                                    cTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGAt                                                             >  2:299911/1‑149 (MQ=255)                                                                                    cTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGAt                                                             >  8:229859/1‑149 (MQ=255)                                                                                     tAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTTTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACa                                                                     <  7:75887/140‑1 (MQ=255)                                                                                     tAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACa                                                                     >  8:75887/1‑140 (MQ=255)                                                                                             ttGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTc                                                    >  3:365359/1‑149 (MQ=255)                                                                                               gCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTcc                                                   <  1:299911/148‑1 (MQ=255)                                                                                                 cAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAATCCGCTGTTCCCGTTCCGGTGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGca                                                <  6:139216/149‑1 (MQ=255)                                                                                                    cagcagCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGTGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGcagcc                                             <  1:105117/149‑1 (MQ=255)                                                                                                          cGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTacctggccgctgctgtttgcaacccctttagggctgttcgggccgatggagttgagcagcagcttcggtgtttcgatcgcgtgggcggcgatcacgtagcgcttgccctgg                                       <  5:139348‑M2/149‑112 (MQ=255)                                                                                                          cGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTacctggccgctgctgttggcaacccctttagggctgttcgggccgatggagttgagcagcagcttcggtgtttcgatcgcgtgggcggcgatcacgtagcgcttgccctgg                                       <  3:158100‑M2/149‑112 (MQ=255)                                                                                                           ggCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTacctggccgctgctgtttgcaacccctttagggctgttcgggccgatggagttgagcagcagcttcggtgtttcgatcgcgtgggcggcgatcacgtagcgcttgccctggg                                      >  6:139348‑M2/1‑37 (MQ=255)                                                                                                            gCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTacctggccgctgctgttggcaacccctttagggctgttcgggccgatggagttgagcagcagcttcggtgtttcgatcgcgtgggcggcgatcacgtagcgcttgccctgggc                                     >  4:158100‑M2/1‑36 (MQ=255)                                                                                                                    ggCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGc                              <  4:365359/148‑1 (MQ=255)                                                                                                                      ccAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGc                              >  8:83464/1‑146 (MQ=255)                                                                                                                      ccAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGc                              <  7:83464/146‑1 (MQ=255)                                                                                                                                gCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGCGTATCGAAATCgg                 >  3:346264/1‑149 (MQ=255)                                                                                                                                 cTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGCGTATCGAAATCGGc                <  7:229859/149‑1 (MQ=255)                                                                                                                                   gACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGCGTATCGAAATCGGCaa              >  1:200802/1‑149 (MQ=255)                                                                                                                                      caccCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGCGTATCGAAATCGGCAAc             >  2:368946/1‑147 (MQ=255)                                                                                                                                            gtgtACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGCGTATCGAAATCGGCAACGAGGGCTg     >  1:121920/1‑149 (MQ=255)                                                                                                                                               tACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGCGTATCGAAATCGGCAACGAGGGCTGGaa  <  2:200802/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     GGCCCAGGGCAAGCGCTACGTGATCGCCGCCCACGCGATCGAAACACCGAAGCTGCTGCTCAACTCCATCGGCCCGAACAGCCCTAAAGGGGTTGCCAACAGCAGCGGCCAGGTCGGCCAGGCATTGGCTGACCACCCGGTGTACCTGGCCTGGGGCCTGATGCCCGAAGGCAAGCCGCTGTTCCCGTTCCGGGGGCCGTTGTCTACCTCGGGGATCGAGGACATGCGCGATGGCCCGTTCCGCAGCCAGCGTGCCGCCTGGCGTATCGAAATCGGCAACGAGGGCTGGAA  >  NC_002947/1857784‑1858074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.