New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 225617841 (0.700)7 (0.130) 3/242 NT 14.8% intergenic (+238/‑466) asd/PP_1990 aspartate‑semialdehyde dehydrogenase/transposase
?NC_002947 4022751 = 42 (0.760)intergenic (‑446/+222) PP_3547/emrB NAD(P)‑binding oxidoreductase/multidrug transporter permease

ATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAAT  >  NC_002947/4022607‑4022898
                                                                                                                                                |                                                                                                                                                     
ggataattcatgccgctgtttaatggcgaaatgtctgctctgacagagccgttgccgttgccgttgcttttgcttttgcttctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgcTCCCg                                                                                                                                                   >  4:216274‑M2/145‑149 (MQ=255)
 ttcaCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCATACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTTCGCTCCGGGGTTCCCTCTCTCCGGGCTTGCTCCCgg                                                                                                                                                  <  2:74603/149‑1 (MQ=255)
 ttcaCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCgg                                                                                                                                                  <  4:293493/149‑1 (MQ=255)
    aCGCAGGCGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGggag                                                                                                                                               >  2:149282/1‑149 (MQ=38)
                cATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCa                                                                                                                                   <  7:263057/149‑1 (MQ=255)
                    gTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGc                                                                                                                                <  5:340816/148‑1 (MQ=255)
                       aCCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGcccc                                                                                                                             >  8:289150/1‑148 (MQ=255)
                              cGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTgg                                                                                                                     <  8:145498/148‑1 (MQ=255)
                                   ttACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCa                                                                                                              >  8:157558/1‑149 (MQ=255)
                                         cggGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCACCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCtt                                                                                                        <  5:247506/149‑1 (MQ=255)
                                          gggTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCtt                                                                                                        >  7:178634/1‑148 (MQ=255)
                                             tCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTTCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACg                                                                                                    <  6:300922/149‑1 (MQ=255)
                                             tCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACg                                                                                                    <  1:41070/149‑1 (MQ=255)
                                               aCTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACggg                                                                                                  >  4:330341/1‑149 (MQ=255)
                                               aCTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACgg                                                                                                   <  7:157558/148‑1 (MQ=255)
                                                     gccgttgccgttgcttttgcttttgcttctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATcc                                                                                             <  3:216274‑M2/57‑1 (MQ=255)
                                                         aaaCGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGCGGGCCCCCCGGCAGGCCCCCTCCAGGGGCCCCGCGCGTGGCGGGCCGCCCTGcc                                                                                        >  3:231029/1‑149 (MQ=14)
                                                               gACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATGGATGCCCGTCaa                                                                                  <  8:178634/149‑2 (MQ=255)
                                                               gACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCCGGAGGACCGCGCAGCAGGCCCCATCCAGGGGCCCAGCGCATGACGGGCATCCCTGCCCGGCAc                                                                                  >  5:162526/1‑149 (MQ=14)
                                                                aCAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCAcc                                                                                 <  6:48455/149‑1 (MQ=255)
                                                                  aaaaaGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGCGGCCCGCGCTGCAGGCCCCCTCCTGGGGCCCCGCGCTTGACGGGCATCCATGCCCGTCACCTc                                                                               >  3:314715/1‑149 (MQ=255)
                                                                     ttgatcttgcttctaagcgcgcggtagtccaggcgacgcagattgcgacttcaggaggccgagtggaggccttgcTCCCGGGAGCACGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCAtctc                                                                               <  1:365755‑M2/72‑1 (MQ=255)
                                                                        attttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcagggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTc                                                                          <  8:125093‑M2/76‑1 (MQ=255)
                                                                        attttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcagggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTc                                                                          >  7:125093‑M2/73‑148 (MQ=255)
                                                                          aCCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGc                                                                        <  6:167093/148‑1 (MQ=255)
                                                                            cAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCCCCTCCCTTCGCAAg                                                                     >  7:276485/1‑149 (MQ=255)
                                                                                tctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgcGGAGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGt                                                                                     <  1:167817‑M2/64‑1 (MQ=255)
                                                                                tctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgcGGAGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGt                                                                                     >  2:167817‑M2/65‑128 (MQ=255)
                                                                                aaaCGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCt                                                                 <  1:349121/149‑1 (MQ=255)
                                                                                    agcgcgcggtagttcaggcgatgcagattgcgacttcaggaggccgagcgcagggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTg                                                                <  8:148981‑M2/86‑1 (MQ=255)
                                                                                        gCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACTTCCCTTCGCAAGCCCTGCGCTCg                                                          <  7:238037/148‑1 (MQ=37)
                                                                                        gCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCgg                                                         >  7:266912/1‑149 (MQ=37)
                                                                                         cTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGcc                                                                   <  2:54236/138‑1 (MQ=37)
                                                                                         cTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGcc                                                                   >  1:54236/1‑138 (MQ=37)
                                                                                             tATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTccc                                                                             <  4:166122/124‑1 (MQ=33)
                                                                                             tATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTccc                                                                             >  3:166122/1‑124 (MQ=33)
                                                                                               tcatcCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCCCCTCCCTTCGCAAGCCCTGCGCTCGGcctccg                                                   >  2:292620/1‑147 (MQ=21)
                                                                                                        cccTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTTCTCCCGGGACGACCGCGCTGCCGGCCCCAACCAGGGGCCCAGCGCTTGACCGGCCTCCATGCCCGTCACCACCCATAGCAACCCCTGCGCACCGCCACCAGAAGTCGCa                                          >  8:139670/1‑148 (MQ=11)
                                                                                                           tGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGcctcct                                                   <  6:346161/136‑1 (MQ=34)
                                                                                                           tGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGcctcct                                                   >  5:346161/1‑136 (MQ=34)
                                                                                                               cTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCgcgg                                  <  3:330341/149‑1 (MQ=38)
                                                                                                                   gCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGGGGACCGCGCGGCCGGCCCCATGCGGGGGGCCCGCGCATGACGGGCATCCATGGCCGGGCCCGCCCTTCGCAAGCCCGGCGCGCGGCCGCCGGAAGTCGCAAACCGCGGCGcc                              >  4:336089/1‑149 (MQ=14)
                                                                                                                   gCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGGCGcc                              <  7:289150/149‑1 (MQ=21)
                                                                                                                            ttCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATc                     <  1:292620/149‑1 (MQ=255)
                                                                                                                            ttCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATc                     <  1:149282/149‑1 (MQ=255)
                                                                                                                               ccTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCa                                          <  7:255426/125‑1 (MQ=32)
                                                                                                                               ccTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCa                                          >  8:255426/1‑125 (MQ=32)
                                                                                                                               ccTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATcgc                   <  1:145895/148‑1 (MQ=255)
                                                                                                                                cTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATcgcgc                 >  7:150767/1‑149 (MQ=255)
                                                                                                                                cTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATcgcgc                 >  3:138788/1‑149 (MQ=255)
                                                                                                                                        gggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAg           >  2:10002‑M2/9‑147 (MQ=255)
                                                                                                                                        gggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGaa         <  6:162526‑M2/141‑1 (MQ=255)
                                                                                                                                        gggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGaa         <  3:165637‑M2/141‑1 (MQ=255)
                                                                                                                                               cTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAAt  <  4:231029‑M2/148‑1 (MQ=255)
                                                                                                                                                tCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAAt  >  2:8021/1‑148 (MQ=255)
                                                                                                                                                tCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAAt  >  5:329769/1‑148 (MQ=255)
                                                                                                                                                |                                                                                                                                                     
ATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAAT  >  NC_002947/4022607‑4022898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.