New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2256178 | 41 (0.700) | 7 (0.130) | 3/242 | NT | 14.8% | intergenic (+238/‑466) | asd/PP_1990 | aspartate‑semialdehyde dehydrogenase/transposase |
? | NC_002947 | 4022751 = | 42 (0.760) | intergenic (‑446/+222) | PP_3547/emrB | NAD(P)‑binding oxidoreductase/multidrug transporter permease |
ATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAAT > NC_002947/4022607‑4022898 | ggataattcatgccgctgtttaatggcgaaatgtctgctctgacagagccgttgccgttgccgttgcttttgcttttgcttctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgcTCCCg > 4:216274‑M2/145‑149 (MQ=255) ttcaCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCATACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTTCGCTCCGGGGTTCCCTCTCTCCGGGCTTGCTCCCgg < 2:74603/149‑1 (MQ=255) ttcaCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCgg < 4:293493/149‑1 (MQ=255) aCGCAGGCGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGggag > 2:149282/1‑149 (MQ=38) cATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCa < 7:263057/149‑1 (MQ=255) gTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGc < 5:340816/148‑1 (MQ=255) aCCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGcccc > 8:289150/1‑148 (MQ=255) cGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑Tgg < 8:145498/148‑1 (MQ=255) ttACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑Ca > 8:157558/1‑149 (MQ=255) cggGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCACCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCtt < 5:247506/149‑1 (MQ=255) gggTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCtt > 7:178634/1‑148 (MQ=255) tCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTTCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACg < 6:300922/149‑1 (MQ=255) tCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACg < 1:41070/149‑1 (MQ=255) aCTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACggg > 4:330341/1‑149 (MQ=255) aCTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACgg < 7:157558/148‑1 (MQ=255) gccgttgccgttgcttttgcttttgcttctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATcc < 3:216274‑M2/57‑1 (MQ=255) aaaCGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGCGGGCCCCCCGGCAGGCCCCCTCC‑AGGGGCC‑CCGCGCGTGGCGGGCCGCCCTGcc > 3:231029/1‑149 (MQ=14) gACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATGGATGCCCGTCaa < 8:178634/149‑2 (MQ=255) gACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCCGGAGGACCGCGCAGCAGGCCCCATCC‑AGGGGCC‑CAGCGCATGACGGGCATCCCTGCCCGGCAc > 5:162526/1‑149 (MQ=14) aCAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCAcc < 6:48455/149‑1 (MQ=255) aaaaaGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGCGGCCCGCGCTGCAGGCCCCCTCC‑TGGGGCC‑CCGCGCTTGACGGGCATCCATGCCCGTCACCTc > 3:314715/1‑149 (MQ=255) ttgatcttgcttctaagcgcgcggtagtccaggcgacgcagattgcgacttcaggaggccgagtggaggccttgcTCCCGGGAGCA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCAtctc < 1:365755‑M2/72‑1 (MQ=255) attttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcagggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTc < 8:125093‑M2/76‑1 (MQ=255) attttgcttctaagcgcgcgatagcccaggcgccgcggattgcgacttcaggaggccgagcgcagggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTc > 7:125093‑M2/73‑148 (MQ=255) aCCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGc < 6:167093/148‑1 (MQ=255) cAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCCCCTCCCTTCGCAAg > 7:276485/1‑149 (MQ=255) tctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgc‑GGAGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGt < 1:167817‑M2/64‑1 (MQ=255) tctaagtgcgcggtagttcaggcgacgcagattgcgacttcaggaggccgagcgcagggcttgc‑GGAGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGt > 2:167817‑M2/65‑128 (MQ=255) aaaCGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCt < 1:349121/149‑1 (MQ=255) agcgcgcggtagttcaggcgatgcagattgcgacttcaggaggccgagcgcagggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTg < 8:148981‑M2/86‑1 (MQ=255) gCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACTTCCCTTCGCAAGCCCTGCGCTCg < 7:238037/148‑1 (MQ=37) gCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCgg > 7:266912/1‑149 (MQ=37) cTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGcc < 2:54236/138‑1 (MQ=37) cTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGcc > 1:54236/1‑138 (MQ=37) tATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTccc < 4:166122/124‑1 (MQ=33) tATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTccc > 3:166122/1‑124 (MQ=33) tcatcCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCCCCTCCCTTCGCAAGCCCTGCGCTCGGcctccg > 2:292620/1‑147 (MQ=21) cccTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTTCTCCCGGGACGACCGCGCTGCCGGCCCCAACC‑AGGGGCC‑CAGCGCTTGACCGGCCTCCATGCCCGTCACCACCCATAGCAACCCCTGCGCACCGCCACCAGAAGTCGCa > 8:139670/1‑148 (MQ=11) tGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGcctcct < 6:346161/136‑1 (MQ=34) tGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGcctcct > 5:346161/1‑136 (MQ=34) cTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCgcgg < 3:330341/149‑1 (MQ=38) gCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGGGGACCGCGCGGCCGGCCCCATGC‑GGGGGGC‑CCGCGCATGACGGGCATCCATGGCCGGGCCCGCCCTTCGCAAGCCCGGCGCGCGGCCGCCGGAAGTCGCAAACCGCGGCGcc > 4:336089/1‑149 (MQ=14) gCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGGCGcc < 7:289150/149‑1 (MQ=21) ttCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCATCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATc < 1:292620/149‑1 (MQ=255) ttCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATc < 1:149282/149‑1 (MQ=255) ccTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCa < 7:255426/125‑1 (MQ=32) ccTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCa > 8:255426/1‑125 (MQ=32) ccTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATcgc < 1:145895/148‑1 (MQ=255) cTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATcgcgc > 7:150767/1‑149 (MQ=255) cTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATcgcgc > 3:138788/1‑149 (MQ=255) gggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAg > 2:10002‑M2/9‑147 (MQ=255) gggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGaa < 6:162526‑M2/141‑1 (MQ=255) gggcttgcTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGaa < 3:165637‑M2/141‑1 (MQ=255) cTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAAt < 4:231029‑M2/148‑1 (MQ=255) tCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAAt > 2:8021/1‑148 (MQ=255) tCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAAt > 5:329769/1‑148 (MQ=255) | ATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAAT > NC_002947/4022607‑4022898 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |