New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3822059 =	47 (0.800)	3 (0.050)	3/250	NT	6.6%	coding (1125/1293 nt)	kguT	2‑ketogluconate transporter, putative
	?	NC_002947	3822129 =	40 (0.700)					coding (1055/1293 nt)	kguT	2‑ketogluconate transporter, putative

CAGCGCACCACACATGAACAGGTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGC  >  NC_002947/3821984‑3822272                                                                                                                                                   |                                                                                                                                                cagcGCACCACACATGAACAGGTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGa                                                                                                                                              <  6:56626/149‑1 (MQ=255) cagcGCACCACACATGAACAGGTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCAACCAGCCACGCGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGa                                                                                                                                              >  4:38227/1‑149 (MQ=255)   gcgcACCACACATGAACAGGTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGAtc                                                                                                                                            <  4:104201/149‑1 (MQ=255)       gctggtggtcgctggtgcctgcatgtacgccccttatggcccgttcttcgcgatcgtgcccgagatcctGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCg                                                                                                                                         >  3:28135‑M1/70‑148 (MQ=255)       accacACATGAACAGGTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCgg                                                                                                                                        >  2:232326/1‑149 (MQ=255)        ctggtggtcgctggtgcctgcatgtacgccccttatggcccgttcttcgcgatcgtgcccgagatcctGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCgg                                                                                                                                        >  7:116678‑M1/69‑148 (MQ=255)              aTGAACAGGTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCATCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCGCCCTGCGACGTTGGCCGGCAGGATCTCGGGCACGa                                                                                                                                  <  1:232326/149‑1 (MQ=255)              aTGAACAGGTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGAt                                                                                                                                 >  7:214315/1‑149 (MQ=255)                  aCAGGTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATcgc                                                                                                                              >  7:350038/1‑148 (MQ=255)                      gTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCgaag                                                                                                                          >  2:152059/1‑148 (MQ=255)                      gTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCgaag                                                                                                                          >  1:322168/1‑148 (MQ=255)                         agagGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGa                                                                                                                                  <  3:10145/137‑1 (MQ=255)                         agagGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGa                                                                                                                                  >  4:10145/1‑137 (MQ=255)                          gagGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACgg                                                                                                                     <  7:200056/149‑1 (MQ=255)                            ggCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGc                                                                                                                   <  5:71696/149‑1 (MQ=255)                            ggCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGc                                                                                                                   >  5:97809/1‑149 (MQ=255)                                      ccgcccgTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGc                                                                                                         <  4:55676/149‑1 (MQ=255)                                      ccgcccgTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGc                                                                                                         <  1:152059/149‑1 (MQ=255)                                          ccgTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTAc                                                                                                     <  6:97809/149‑1 (MQ=255)                                           cgTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACa                                                                                                    <  7:58231/149‑1 (MQ=255)                                             tAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATg                                                                                                  <  4:352750/149‑1 (MQ=255)                                                 cccATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCgaa                                                                                                                           <  6:271714/120‑1 (MQ=255)                                                 cccATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCgaa                                                                                                                           >  5:271714/1‑120 (MQ=255)                                                        aGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAg                                                                                        <  6:69298/148‑1 (MQ=255)                                                        aGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGc                                                                                       <  6:331764/149‑1 (MQ=255)                                                        aGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGc                                                                                       >  5:347730/1‑149 (MQ=255)                                                                caccaGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGAccacca                                                                               <  5:328288/149‑1 (MQ=255)                                                                cacaaGCCACGATCCTCCAAACGAGCCCAGCGCACCCATGCTGTTGATAAGCTCCATGGCGCCG‑CATGCGCCGTTGGCCGGCAGGATCTCGGGCACGATAGCGAAGAACGGGCCAGAAGGGGCGTACATGCAGGCACCAGCGaccac                                                                                 >  2:217027/1‑147 (MQ=255)                                                                   ccgagatcctgccggccaacgtcgcaggcggcgccatggcgctgatcaacagcatgggggcgctgggctcgtttggcggcAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAg                                                                              >  7:116678‑M2/81‑148 (MQ=255)                                                                    cgagatcctgccggccaacgtcgcaggcggcgccatggcgctgatcaacagcatgggggcgctgggctcgtttggcggcAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGc                                                                             >  3:28135‑M2/80‑148 (MQ=255)                                                                    aGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCaa                                                                           >  7:303504/1‑149 (MQ=255)                                                                     gCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAAt                                                                          <  2:322168/149‑1 (MQ=255)                                                                          gAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGGTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATa                                                                     <  4:224065/149‑1 (MQ=255)                                                                           aGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATAc                                                                    <  8:214315/149‑1 (MQ=255)                                                                           aGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATAc                                                                    <  6:347730/149‑1 (MQ=255)                                                                                          ccAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGc                                                     <  3:38227/149‑1 (MQ=255)                                                                                             ggcggcgccatggcgctgatcaacagcatgggggcgctgggctcgtttggcggcAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTc                                                   <  4:28135‑M2/95‑1 (MQ=255)                                                                                                         tGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAg                                         <  1:27918/146‑1 (MQ=255)                                                                                                         tGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAg                                         >  2:27918/1‑146 (MQ=255)                                                                                                             gATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAg                                   >  3:112957/1‑148 (MQ=255)                                                                                                                   cgcCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATcgc                                                                                                                              <  1:326979/51‑1 (MQ=255)                                                                                                                   cgcCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATcgc                                                                                                                              >  2:326979/1‑51 (MQ=255)                                                                                                                    gcCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCAt                            >  3:137578/1‑148 (MQ=255)                                                                                                                    gcCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCATa                           <  6:41866/149‑1 (MQ=255)                                                                                                                       aTGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCTCCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCAt                            >  7:126703/1‑145 (MQ=255)                                                                                                                       aTGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCTCCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCAt                            <  8:126703/145‑1 (MQ=255)                                                                                                                                     cGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGc            <  4:112957/148‑1 (MQ=255)                                                                                                                                           tGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACCCGGCAATcag      >  7:202533/1‑148 (MQ=255)                                                                                                                                            ggCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATcag      >  1:48593/1‑147 (MQ=255)                                                                                                                                            ggCCGGCAGGATCTCGGGCACGATCGCGAAGAAAGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATcag      >  1:42959/1‑147 (MQ=255)                                                                                                                                             gCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATcagcag   <  4:137578/149‑1 (MQ=255)                                                                                                                                              ccGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATCagcagc  >  6:351069/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                CAGCGCACCACACATGAACAGGTAAGAGGCGCCGGGCCCGCCCGTAGCCCCATTGAGGTAGCCCACCAGCCACGAGCCGCCAAACGAGCCCAGCGCCCCCATGCTGTTGATCAGCGCCATGGCGCCG‑CCTGCGACGTTGGCCGGCAGGATCTCGGGCACGATCGCGAAGAACGGGCCATAAGGGGCGTACATGCAGGCACCAGCGACCACCAGCAATGCATACGACAGCCAGAAATGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGC  >  NC_002947/3821984‑3822272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.