New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 525590857 (0.970)3 (0.050) 3/244 NT 5.4% coding (438/738 nt) folM bifunctional dihydrofolate reductase/dihydromonapterin reductase
?NC_002947 = 5255941 51 (0.920)coding (471/738 nt) folM bifunctional dihydrofolate reductase/dihydromonapterin reductase

ACGTCGAAGCGCCCTACCACCTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGCCTACCGCCAGCAAACCCTGAAAAAGGCCTTGCTGGAGT  >  NC_002947/5255805‑5256089
                                                                                                                                         |                                                                                                                                                    
aCGTCGAAGCGCCCTATCACCTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTg                                                                                                                                             >  3:214440/1‑146 (MQ=255)
  gTCGAAGCGCCCTACCACCTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGCTCATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAg                                                                                                                                          >  1:111408/1‑148 (MQ=255)
   tCGAAGCGCCCTACCACCTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGgcc                                                                                                                                                   >  6:191415‑M2/1‑134 (MQ=255)
   tCGAAGCGCCCTACCACCTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGgcc                                                                                                                                                   <  5:191415‑M2/137‑4 (MQ=255)
     gAAGCGCCCTACCACCTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACAt                                                                                                                                     >  8:302536/1‑149 (MQ=255)
      aaGCGCCCTACCACCTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATg                                                                                                                                    <  4:13023/149‑1 (MQ=255)
              tACCACCTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGt                                                                                                                             >  4:3342/1‑148 (MQ=255)
                  accTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAACCCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTc                                                                                                                        >  7:284998/1‑149 (MQ=255)
                  accTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTc                                                                                                                        >  5:321498/1‑149 (MQ=255)
                  accTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTc                                                                                                                        <  4:214440/149‑1 (MQ=255)
                            ggCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGaaaaa                                                                                                               >  4:282679/1‑148 (MQ=255)
                               ccTGGGCGACCTTCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGc                                                                                                                      <  4:10750/138‑1 (MQ=255)
                                gtGGGCGACCTGCTTGCCAAGGTGGAAAAGGCCGACATCATCCTCATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATgc                                                                                                          <  8:66288/148‑1 (MQ=255)
                                     cGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGccc                                                                                                      >  6:316299/1‑148 (MQ=255)
                                         ctgctgGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGt                                                                                                 >  8:118569/1‑149 (MQ=255)
                                         ctgctgGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGt                                                                                                 >  5:79615/1‑149 (MQ=255)
                                               gCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCgtgt                                                                                           >  8:215510/1‑149 (MQ=255)
                                               gCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCgt                                                                                             <  7:302536/147‑1 (MQ=255)
                                               gCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCgt                                                                                             <  3:361687/147‑1 (MQ=255)
                                                    ggTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAATATGCGCCCAAGGTGCGTGTGacagg                                                                                     >  7:141943/1‑145 (MQ=255)
                                                      tGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGt                                                                                    >  4:190608/1‑149 (MQ=255)
                                                       ggAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAat                                                                                                              <  1:94868/122‑1 (MQ=255)
                                                           aaGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCt                                                                               <  5:316299/149‑1 (MQ=255)
                                                                   aCATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCggg                                                                        <  7:118569/149‑1 (MQ=255)
                                                                    catcatCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGgc                                                                       <  2:111408/149‑1 (MQ=255)
                                                                       gatgtacaTCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGgctgc                                                                    <  5:161937/144‑1 (MQ=255)
                                                                        atcCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGgctgct                                                                   >  2:57273/1‑149 (MQ=255)
                                                                        atcCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGgctgc                                                                    <  6:321498/148‑1 (MQ=255)
                                                                        atcCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGgctgc                                                                    <  6:79615/148‑1 (MQ=255)
                                                                        atcCACATCTGCGACGAAACCTCCTCGCGCGACAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGgctgct                                                                   >  4:152803/1‑149 (MQ=255)
                                                                          ccACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGa                                                                 >  1:201745/1‑149 (MQ=255)
                                                                          ccACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGa                                                                 >  2:294152/1‑149 (MQ=255)
                                                                           cacaTCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGa                                                                 <  3:3342/148‑1 (MQ=255)
                                                                            acaTCTGCGACGAAACCTCCTCGCGCGGCTGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAg                                                                                                   <  8:106655/113‑1 (MQ=255)
                                                                            acaTCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAg                                                                                                   >  7:106655/1‑113 (MQ=255)
                                                                                 tGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTc                                                            >  1:36821/1‑147 (MQ=255)
                                                                                   cgacgaAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCa                                                           <  1:294152/146‑1 (MQ=255)
                                                                                    gacgaAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTg                                                                                                                                 >  6:211243/1‑75 (MQ=255)
                                                                                    gacgaAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTg                                                                                                                                 <  5:211243/75‑1 (MQ=255)
                                                                                    gacgaAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCgtgt                                                                                           <  8:265234/113‑1 (MQ=255)
                                                                                    gacgaAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCgtgt                                                                                           >  7:265234/1‑113 (MQ=255)
                                                                                       gaAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCaaggaagg                                                    >  2:226661/1‑149 (MQ=255)
                                                                                         aaCCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAgggg                                                  <  3:287091/149‑1 (MQ=255)
                                                                                           cctcctCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGt                                                <  1:78224/149‑1 (MQ=255)
                                                                                            ctcctcGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGTGCTGCTGATCCTCAAGGAAGGGGGt                                                >  6:192811/1‑148 (MQ=255)
                                                                                              cctcGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTgac                                             >  6:112454/1‑149 (MQ=255)
                                                                                                 cgcgcgGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGgccgcgcgaggaggtttcgtcgcagatgtggatgatgtcggccttttccaccttggccagcaggtcgccaagggccaggatgaggtggtagggcgcttcgaagtgcag                                          <  4:249625‑M2/149‑109 (MQ=255)
                                                                                                   cgcgGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGc                                        <  3:282679/149‑1 (MQ=255)
                                                                                                        cAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGCCTAcc                                   <  5:112454/149‑1 (MQ=255)
                                                                                                          gTAAAAGCCACATCGGCTACGCCGCCACCAAGgccgcgcgaggaggtttcgtcgcagatgtggatgatgtcggccttttccaccttggccagcaggtcgcccagggccaggttgaggtggtatggcgcttcgacgtgcaggcggaacat                                 <  8:162041‑M2/149‑118 (MQ=255)
                                                                                                          gTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCaaggaagg                                                    <  2:21496/130‑1 (MQ=255)
                                                                                                          gTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCaaggaagg                                                    >  1:21496/1‑130 (MQ=255)
                                                                                                           tAAAAGCCACATCGGCTACGCCGCCACCAAGgccgcgcgaggaggtttcgtcgcagatgtggatgatgtcggccttttccaccttggccagcaggtcgcccagggccaggttgaggtggtagggcgcttcgacgtgcaggcggaacatg                                >  3:249625‑M2/1‑31 (MQ=255)
                                                                                                                gCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGCCTACCGCCAGCa                            >  8:40535/1‑148 (MQ=255)
                                                                                                                 ccACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGCCTACCGCCAGCaaa                          >  4:148864/1‑149 (MQ=255)
                                                                                                                  cacaTCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGCCTACCGCCAGCAAAc                         <  2:36821/149‑1 (MQ=255)
                                                                                                                                cgccACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGCCTAc                                    <  3:260601/124‑1 (MQ=255)
                                                                                                                                cgccACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGCCTAc                                    >  4:260601/1‑124 (MQ=255)
                                                                                                                                       aaGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGCCTACCGCCAGCAAACCCTGAAAAAGGCCTTGCTGGa    <  3:190608/149‑1 (MQ=255)
                                                                                                                                         ggCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGCCTACCGCCAGCAAACCCTGAAAAAGGCCTTGCTGGAGt  >  8:201691/1‑149 (MQ=255)
                                                                                                                                         |                                                                                                                                                    
ACGTCGAAGCGCCCTACCACCTCAACCTGGCCCTGGGCGACCTGCTGGCCAAGGTGGAAAAGGCCGACATCATCCACATCTGCGACGAAACCTCCTCGCGCGGCAGTAAAAGCCACATCGGCTACGCCGCCACCAAGGCCGCGCTGCAGAACATGGTGCTGTCATTCGCCGAAAAATATGCGCCCAAGGTGCGTGTGAACGGTATCCTGCCCGGGCTGCTGATCCTCAAGGAAGGGGGTGACGACGCCTACCGCCAGCAAACCCTGAAAAAGGCCTTGCTGGAGT  >  NC_002947/5255805‑5256089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.