New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5283665	47 (0.800)	3 (0.050)	3/242	NT	6.5%	coding (70/1920 nt)	PP_4658	methyl‑accepting chemotaxis protein
	?	NC_002947	= 5283692	42 (0.760)					coding (97/1920 nt)	PP_4658	methyl‑accepting chemotaxis protein

CTGGCGATCGAAGATCAAGAGAGCGAAATCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAACGGCGACGATACCGCCGCCGCCAACACCCTGGC  >  NC_002947/5283548‑5283837                                                                                                                                                 |                                                                                                                                                  cTGGCGATCGAAGATCAAGAGAGCGAAATCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTggac                                                                                                                                               >  6:336102‑M2/1‑145 (MQ=255)    gCGATCGAAGATCAAGAGAGCGAAATCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTggacca                                                                                                                                             >  3:178489‑M2/1‑142 (MQ=255)        tCGAAGATCAAGAGAGCGAAATCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTg                                                                                                                                        <  7:123316/149‑1 (MQ=255)          gAAGATCAAGAGAGCGAAATCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTTACTGGCCTGCTGGCCCTCACCGGCTggac                                                                                                                                               <  1:305789‑M2/140‑5 (MQ=255)          gAAGATCAAGAGAGCGAAATCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTTACTGGCCTGCTGGCCCTCACCGGCTggac                                                                                                                                               >  2:305789‑M2/1‑136 (MQ=255)          gAAGATCAAGAGAGCGAAATCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTggg                                                                                                                                      <  7:249090/149‑1 (MQ=255)          gAAGATCAAGAGAGCGAAATCAACTTCTGGAGACCGGGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTgg                                                                                                                                       <  7:290475/148‑1 (MQ=255)                    agagCGAAATCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATc                                                                                                                            <  3:178275/149‑1 (MQ=255)                          aaaTCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCg                                                                                                                       >  6:256539/1‑148 (MQ=255)                            aTCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACCGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGcccatc                                                                                                                     >  7:181993/1‑145 (MQ=255)                                aCTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAAc                                                                                                                >  8:7031/1‑149 (MQ=255)                                  ttCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGcc                                                                                                                                 >  1:276537/1‑130 (MQ=255)                                  ttCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGcc                                                                                                                                 <  2:276537/130‑1 (MQ=255)                                    cTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTgg                                                                                                             <  3:139029/148‑1 (MQ=255)                                      ggAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATg                                                                                                          >  7:341514/1‑149 (MQ=255)                                       gagaGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCATAGCAACTGGAt                                                                                                           <  2:122652/147‑1 (MQ=255)                                        agagCGTGCATGAACAGCTGGATCGCCAACATGAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATggg                                                                                                        <  8:48274/149‑1 (MQ=255)                                               gCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATAtt                                                                                                 >  2:315828/1‑149 (MQ=255)                                                cATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGCCCTGCTGGCCCTAACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAAATGGATGGGCGATATTg                                                                                                >  3:297941/1‑149 (MQ=255)                                                      cAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGt                                                                                          >  3:167457/1‑149 (MQ=255)                                                         cgggTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCGTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGa                                                                                       <  2:301018/147‑1 (MQ=255)                                                            gTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAAc                                                                                     >  6:169477/1‑148 (MQ=255)                                                            gTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAAc                                                                                     >  4:342432/1‑148 (MQ=255)                                                                    aCATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCATCACCGGATGGACCCGCCGGGGCAGCGTGTTGGACCGAACCACGTGGAGGGGCGTAATTGGCCAGTAAAAAAAGGAcga                                                                             >  1:310826/1‑146 (MQ=255)                                                                      aTCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCAc                                                                          >  6:55851/1‑149 (MQ=255)                                                                               aaCCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACg                                                                 >  1:238997/1‑149 (MQ=255)                                                                                  cTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCAt                                                              >  5:97191/1‑149 (MQ=255)                                                                                  cTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCAt                                                              >  1:365345/1‑149 (MQ=255)                                                                                       aCTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCGTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTgcgc                                                         <  8:341514/149‑1 (MQ=255)                                                                                       aCTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTgcgc                                                         >  8:54600/1‑149 (MQ=255)                                                                                           ggCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCa                                                                           <  4:242063/127‑1 (MQ=255)                                                                                           ggCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCa                                                                           >  3:242063/1‑127 (MQ=255)                                                                                           ggCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTgcgcgc                                                       <  7:7031/147‑1 (MQ=255)                                                                                              cTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCa                                                  <  5:169477/149‑1 (MQ=255)                                                                                               tGGTCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGACCTAACAGGCTTGACCAGCCTGGTCATCCTGATCGACCGTAGCAACTGGATGGGCGAGATTGTCCAGTTGAACAAGGACCGCACCTATCTCCGCATTGCGCGCCTGCAg                                                 >  3:45301/1‑149 (MQ=255)                                                                                                 ggCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAg                                                 <  4:167457/147‑1 (MQ=255)                                                                                                 ggCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGt                                                <  4:23346/148‑1 (MQ=255)                                                                                                 ggCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGt                                                >  3:23346/1‑148 (MQ=255)                                                                                                   cTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACa                                             >  4:108035/1‑149 (MQ=255)                                                                                                         ccTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTggaccagcaccaggccgaagcccaggccgagtttaaggttgacgctgatgttggcgaaccagctgttcatgcacgctctccagaagttgatttcgctctct                                              <  1:61816‑M2/142‑102 (MQ=255)                                                                                                         ccTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTggaccagcaccaggccgaagcccaggccgagtttaaggttgacgctgatgttggcgaaccagctgttcatgcacgctctccagaagttgatttcgctctct                                              >  2:61816‑M2/1‑41 (MQ=255)                                                                                                          cTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTggaccagcaccaggccgaagcccaggccgagtttaaggttgacgctgatgttggcgaaccagctgttcatgcacgctctccagaagttgatttcgctctcttgatcttc                                      <  6:372104‑M2/149‑110 (MQ=255)                                                                                                             gTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCaa                                   >  3:330901/1‑149 (MQ=255)                                                                                                              tGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAAc                                  <  5:55851/149‑1 (MQ=255)                                                                                                              tGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAAc                                  <  1:315828/149‑1 (MQ=255)                                                                                                                      cTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAACGGcgacga                          <  2:365345/149‑1 (MQ=255)                                                                                                                                  ctgGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAACGGCGACGATAccgccgcc                <  3:342432/147‑1 (MQ=255)                                                                                                                                   tgGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAACGGCGACGATACcgccgccgc              >  6:119349/1‑148 (MQ=255)                                                                                                                                     gCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAACGGCGACGATACCGCCGCCGCCaa           <  2:238997/149‑1 (MQ=255)                                                                                                                                     gCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAACGGCGACGATACCGCCGCCGCCaa           >  5:166935/1‑149 (MQ=255)                                                                                                                                       ccTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAACGGCGAAGATACCGCCGCCGCCAaca         >  1:27988/1‑149 (MQ=255)                                                                                                                                         tCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAACGGCGACGATACCGCCGCCGCCAACAcc       >  8:81461/1‑149 (MQ=255)                                                                                                                                            caggCTTGACCAGCCTGGGCAGCATGATCGAACGTAGAAACTGGATGTTCGATATTGGCCATTTTAAAAATGACCTCACCTATCTACGCATTGAGCGCCTGCAGTACATTATCGCCAACGGCGACGATAACGCCTCAGCCAACACCCTg    <  4:45301/147‑1 (MQ=255)                                                                                                                                              ggCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAACGGCGACGATACCGCCGCCGCCAACACCCTGGc  <  6:97191/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CTGGCGATCGAAGATCAAGAGAGCGAAATCAACTTCTGGAGAGCGTGCATGAACAGCTGGTTCGCCAACATCAGCGTCAACCTTAAACTCGGCCTGGGCTTCGGCCTGGTGCTGGTCCTCACTGGCCTGCTGGCCCTCACCGGCTGGACCAGCCTGGGCAGCCTGATCGACCGTAGCAACTGGATGGGCGATATTGGCCAGTTGAACAAGGACCTCACCGATCTACGCATTGCGCGCCTGCAGTACATGATCGCCAACGGCGACGATACCGCCGCCGCCAACACCCTGGC  >  NC_002947/5283548‑5283837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.