New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5288394 =	24 (0.410)	4 (0.090)	4/198	NT	21.4%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5288488 =	11 (0.240)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B

AGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTTGGCC  >  NC_002947/5288346‑5288635                                                                                                                                               |                                                                                                                                                    aGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTTCCCGCTCCCCCAAGTACTGCAAAGTGCTTGAAACCAGCGTAATACCTGTGGGAGCGGGGAATCCCCCCAAGAGGCCGGTa                                                                                                                                                  >  3:84141/1‑146 (MQ=255)                                                                ttgcccgctcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAAcgcc                                                                                >  6:85448‑M2/80‑149 (MQ=255)                                                                TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGAc                                                                                                                                             >  6:354809‑M1/1‑88 (MQ=255)                                                                TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGAc                                                                                                                                             <  5:354809‑M1/88‑1 (MQ=255)                                                                   CCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACgccgcc                                                                             <  8:680‑M1/149‑1 (MQ=255)                                                                    CCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAAcgc                                                                                 <  2:30449‑M1/144‑1 (MQ=255)                                                                    CCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAAcgc                                                                                 >  1:30449‑M1/1‑144 (MQ=255)                                                                    CCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGccgccg                                                                            <  4:13359‑M1/149‑1 (MQ=255)                                                                      gctcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCgg                                                                           >  4:171478‑M2/74‑148 (MQ=255)                                                                        tcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGca                                                                         >  5:172491‑M2/72‑148 (MQ=255)                                                                        TCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGca                                                                         <  4:165565‑M1/148‑1 (MQ=255)                                                                          CCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACAt                                                                      <  4:294839‑M1/149‑1 (MQ=255)                                                                          CCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGACAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACAt                                                                      <  7:141964‑M1/149‑1 (MQ=255)                                                                            ACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATcc                                                                    <  8:197014‑M1/149‑1 (MQ=255)                                                                              AAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGc                                                                                                   <  6:228513‑M1/116‑1 (MQ=255)                                                                              AAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGc                                                                                                   >  5:228513‑M1/1‑116 (MQ=255)                                                                                   ttacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGgcgc                                                              <  3:171478‑M2/88‑1 (MQ=255)                                                                                    tGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCtt                                                            >  7:336819/1‑149 (MQ=255)                                                                                    tGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCt                                                             >  6:267086/1‑148 (MQ=255)                                                                                    tGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATACGGGCGCtt                                                            >  3:115628/1‑149 (MQ=255)                                                                                        aaGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTtcatc                                                        <  7:680/149‑1 (MQ=255)                                                                                        aaGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTtcatc                                                        <  3:165565/149‑1 (MQ=255)                                                                                           tCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATcaca                                                     >  2:194722/1‑149 (MQ=255)                                                                                             cTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCTGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACAt                                                    <  8:336819/148‑1 (MQ=255)                                                                                             cTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCACGCGAAGAGGCCGGTACAGACAGAAAATTACTGTGCCTTGCCAAACCCCTTGTCCAGATGGGCCTCATAAGCGGCCAACGCAGCCGGCACATACGGGCGCTGCATCACATc                                                   >  8:171534/1‑149 (MQ=255)                                                                                                     cTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCa                                           <  5:267086/149‑1 (MQ=255)                                                                                                      tGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAg                                          >  7:302073/1‑149 (MQ=255)                                                                                                           aaTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAgg                                     >  6:48235/1‑149 (MQ=255)                                                                                                                cTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGgc                                                                >  8:270208/1‑117 (MQ=255)                                                                                                                           ggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCAt                     <  5:85448‑M2/129‑1 (MQ=255)                                                                                                                            gcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATg                    >  2:70622‑M2/20‑149 (MQ=255)                                                                                                                              aagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGcc                  <  1:70622‑M2/132‑1 (MQ=255)                                                                                                                                 cccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAg               >  4:92527‑M2/15‑149 (MQ=255)                                                                                                                                 ccagcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTAGTCCAGATGGGCCTCATAAGCAGCCAACGCCGCCGGCCGATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAg               >  5:270988‑M2/15‑149 (MQ=255)                                                                                                                                   cgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAgg              >  6:312507‑M2/13‑148 (MQ=255)                                                                                                                                     cgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGt                        >  1:1338‑M2/11‑136 (MQ=255)                                                                                                                                     cgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGt                        <  2:1338‑M2/126‑1 (MQ=255)                                                                                                                                     cgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAAc           <  6:172491‑M2/139‑1 (MQ=255)                                                                                                                                        agaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCAGAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTgg        <  7:197014‑M2/142‑1 (MQ=255)                                                                                                                                            gccGGTACAGACATAAAATTTCTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGgc                                                                >  7:242753‑M2/4‑89 (MQ=255)                                                                                                                                            gccGGTACAGACATAAAATTTCTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGgc                                                                <  8:242753‑M2/86‑1 (MQ=255)                                                                                                                                            gccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTTgg    <  3:92527‑M2/146‑1 (MQ=255)                                                                                                                                              cGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTTGGcc  >  1:356541‑M2/2‑149 (MQ=255)                                                                                                                                              cGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTAGGCAGGCCGGTCATGCCCAGGAACTGGTTGGcc  <  7:171534‑M2/148‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    AGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGTTGGCC  >  NC_002947/5288346‑5288635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.