| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,839,224 | C→G | 16.7% | intergenic (+46/‑134) | ccoP‑I → / → PP_4254 | cbb3‑type cytochrome c oxidase subunit/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,839,224 | 0 | C | G | 16.7% | 66.3 / 9.3 | 30 | intergenic (+46/‑134) | ccoP‑I/PP_4254 | cbb3‑type cytochrome c oxidase subunit/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (7/18); new base G (2/3); total (9/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.08e-01 | |||||||||||
GCGCAGGCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCTTGTTGCCTCAGTGGGCTTCGCTCCG > NC_002947/4839077‑4839372 | gcgcAGGCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCcgcg > 3:115006/1‑149 (MQ=255) cAGGCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCgcgg < 4:115006/149‑1 (MQ=255) gCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGgcgc < 4:127413/149‑1 (MQ=255) cGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTc < 7:33175/149‑1 (MQ=255) ggggAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGc > 3:303457/1‑149 (MQ=255) ggAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGccc < 8:182863/149‑1 (MQ=255) gAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGccc > 5:235551/1‑148 (MQ=255) aTGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCccac < 6:235551/149‑1 (MQ=255) gACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGATGGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCccac > 1:91712/1‑148 (MQ=255) ggTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAAcc < 2:91712/149‑1 (MQ=255) gTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCt < 3:82759/126‑1 (MQ=255) gTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCt > 4:209020/1‑126 (MQ=255) gTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCt < 3:209020/126‑1 (MQ=255) gTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCt > 4:82759/1‑126 (MQ=255) ctgctgGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAAc < 7:141329/149‑1 (MQ=255) ctgGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCtt < 7:80537/149‑1 (MQ=255) gcggcTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCAt > 2:330275/1‑138 (MQ=255) gcggcTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCAt < 1:330275/138‑1 (MQ=255) gcggcTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTaca < 4:303457/149‑1 (MQ=255) gcggcTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTa < 8:178788/147‑1 (MQ=255) gtgtATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATaa > 4:260186/1‑125 (MQ=255) gtgtATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCAAAACCAACAAACCTTACACGCcccccc > 6:320725/1‑149 (MQ=255) gtgtATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCCCGCGGCGCTCGATATCCGCCCCACCATaa < 3:260186/125‑1 (MQ=255) gtATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCaaa > 7:316006/1‑131 (MQ=255) gtATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCaaa < 8:316006/131‑1 (MQ=255) tataGCCTGTCGCAGGAT‑GGTTCTGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCccac < 5:72015/149‑1 (MQ=255) tataGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCcca < 3:209810/148‑1 (MQ=255) gCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCcccttcc < 3:121419/149‑1 (MQ=255) aGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTg < 5:283524/149‑1 (MQ=255) gccTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCtt < 1:230310/149‑1 (MQ=255) aTCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATa < 1:12821/89‑1 (MQ=255) ggcgcccgcGCGGCGGTCGTTTTCCGGCCCAACCTAACCCTCAAAACATTCACCCCCGCCCCACCATGCCCCTCAAACCCTTCCCCCACCGGCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCTTGTTGCCTCAGTGGGc < 5:320725/146‑1 (MQ=255) cgcgGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCTTGTTGCCTCAGTGGGCTTCGCTCCg < 4:76864/149‑1 (MQ=255) | GCGCAGGCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGAT‑GGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCTTGTTGCCTCAGTGGGCTTCGCTCCG > NC_002947/4839077‑4839372 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |