Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,855,539 | T→G | 8.0% | I106M (ATT→ATG) | PP_4270 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,855,539 | 0 | T | G | 8.0% | 150.8 / 5.4 | 50 | I106M (ATT→ATG) | PP_4270 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (23/23); new base G (2/2); total (25/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.56e-01 |
GGCGCTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCACCGTGAG > NC_002947/4855396‑4855686 | ggCGCTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATtcatc < 6:331832/148‑1 (MQ=255) gcTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAgcg > 5:348897/1‑149 (MQ=255) cTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATGAATCAgcgg < 2:367287/149‑2 (MQ=255) ccGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATATTGTGTGGAGTATCCCGCAGATTCATCAGCGCGACg > 5:150576/1‑147 (MQ=255) tCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGtt > 6:44537/1‑149 (MQ=255) ccACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGtt < 4:314655/148‑1 (MQ=255) cACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTg < 1:105424/148‑1 (MQ=255) gccgtcctgtgcatgTATGAGGCCATGAGGAGCGGATATTTTGATGTGCGTTGCTACGTCAGTAGCCAGTGGCTCATCGACGGTCCAAGTGATTTTGTGTGGAGTTTCCCGCTGATTCTTCAGCTCGACGTACTGGTTGGGCGCCGCgg < 6:150576/144‑1 (MQ=255) gcctgGAGGAGGCCATGAGCAGCGGCGATATTGCTGGGCGTTGCTACGGCAGTACCCAGTGGCTCCACGACCGTCCACGGGCTTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGGTGGCCGCCCCGGCGACAGCAcc < 3:233156/149‑1 (MQ=255) cctgGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTTGAGTATCCCGCTGATTCATCAGCGCGACGTACTgg > 8:297732/1‑125 (MQ=255) cctgGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCAccc < 1:208178/149‑1 (MQ=255) cctgGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTCGAGTATCCCGCTGATTCATCAGCGCGACGTACTgg < 7:297732/125‑1 (MQ=255) gaggagGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGAt > 7:204911/1‑149 (MQ=255) gaggagGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGAt < 6:348897/149‑1 (MQ=255) ggaggCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGc > 8:258653/1‑149 (MQ=255) ggCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGAAGTACTGGTTGGCCGCCCCGTCGACAGCACCACGATGcccc > 2:34773/1‑149 (MQ=255) cATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAgc < 2:205170/101‑1 (MQ=255) cATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAgc > 1:205170/1‑101 (MQ=255) gcagcGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGTCCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCaa < 2:47544/149‑1 (MQ=255) cagcGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATGAATCAGCGGGa > 3:123260/1‑99 (MQ=255) cagcGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATGAATCAGCGGGa < 4:123260/99‑1 (MQ=255) ttGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCa < 8:204911/148‑1 (MQ=255) gATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCAccc < 6:68023/144‑1 (MQ=255) gATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCAccc > 5:68023/1‑144 (MQ=255) aTGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCg < 8:275268/149‑1 (MQ=255) gTTGCTACGTCAGTACCCAGTGGCTCAACGACCATCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGc < 4:29178/149‑1 (MQ=255) cTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACg < 1:34773/148‑1 (MQ=255) tACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGAACCCCGATGCCCCCGGAGCAAATGCAACCCCAGGCGAGCGGCACGGt > 5:210949/1‑149 (MQ=255) cGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGt < 5:44537/147‑1 (MQ=255) aGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTgg < 4:366749/148‑1 (MQ=255) ccAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAg > 4:284460/1‑124 (MQ=255) ccAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAg < 3:284460/124‑1 (MQ=255) gCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTAtt > 8:345381/1‑149 (MQ=255) cTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTAtt > 7:325176/1‑148 (MQ=255) tCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTg < 3:316727/134‑1 (MQ=255) tCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTg > 4:316727/1‑134 (MQ=255) tCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTAt < 2:42560/146‑1 (MQ=255) tCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTAt > 1:42560/1‑146 (MQ=255) tCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTc > 6:26208/1‑148 (MQ=255) gACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCt > 2:19232/1‑149 (MQ=255) aaGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGa > 2:9093/1‑87 (MQ=255) aaGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGa < 1:9093/87‑1 (MQ=255) gggATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCActg > 2:357105/1‑149 (MQ=255) ggATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCActgc < 8:325176/149‑1 (MQ=255) tgtgtgGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGAc < 5:26208/148‑1 (MQ=255) gtcgcGCTGATGAATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGtt > 2:231075/5‑149 (MQ=255) tCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTg > 3:160772/1‑149 (MQ=255) ccGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCa > 5:26587/1‑149 (MQ=255) taaTTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCACCGt > 6:246002/3‑149 (MQ=255) tGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCActgc < 7:116751/126‑1 (MQ=255) tGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCActgc > 8:116751/1‑126 (MQ=255) ttCATCAGCGCGACGTACTGGTTGTCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCACCGTGAg < 7:345381/149‑1 (MQ=255) tcatcaGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCACTGTGAg > 5:137094/1‑148 (MQ=255) | GGCGCTCGCCCCGAGTTCCACGTCATGGCCCGCCTGCGCCTGGAGGAGGCCATGAGCAGCGGCGATATTGATGTGCGTTGCTACGTCAGTACCCAGTGGCTCAACGACCGTCCAAGGGATTTTGTGTGGAGTATCCCGCTGATTCATCAGCGCGACGTACTGGTTGGCCGCCCCGGCGACAGCACCCCGATGCCCCCGGAGCAACTGCCACCCCAGGCGATCGGCACGGTGCTGGGCTACACCTATTCAACCCTGCAACCACTGCTGGACCACGGCCAGTTGCACCGTGAG > NC_002947/4855396‑4855686 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |