Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,874,171 | T→A | 12.0% | N121I (AAC→ATC) ‡ | PP_4283 ← | GntR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,874,171 | 0 | T | A | 12.0% | 131.0 / 9.3 | 50 | N121I (AAC→ATC) ‡ | PP_4283 | GntR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base T (24/20); new base A (4/2); total (28/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.83e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.05e-01 |
ACCAGGCTGCGCTGGAAACTCACCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCGCAGCAGCACCACGCTTT > NC_002947/4874024‑4874318 | aCCAGGCTGCGCTGGAAACTCACCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTGATCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGt < 1:50103/149‑1 (MQ=255) cAGGCTGCGCTGGAAACTCACCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGa < 8:16394/149‑1 (MQ=255) cAGGCTGCGCTGGAAACTCACCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGa < 7:54452/149‑1 (MQ=255) cTGCGCTGGAAACTCACCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCAACGA‑gctg < 8:201527/149‑1 (MQ=255) gcgcTGGAAACTCACCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑gctgct > 6:67268/1‑149 (MQ=255) cTGGAAACTCACCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCgg > 1:326665/1‑149 (MQ=255) aaCTCACCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTg < 3:323793/149‑1 (MQ=255) cACCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCAt > 2:280333/1‑149 (MQ=255) aCCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCAtg > 8:135266/1‑149 (MQ=255) ccAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCAtgc > 5:182950/1‑149 (MQ=255) cGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGgc < 4:166402/148‑1 (MQ=255) cGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGgc < 5:203527/148‑1 (MQ=255) ccAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGtt < 5:229916/100‑1 (MQ=255) ccAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGtt > 6:229916/1‑100 (MQ=255) cTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGATGCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCg < 1:243323/134‑1 (MQ=255) cTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCg > 2:243323/1‑133 (MQ=255) aGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCa < 7:135266/148‑1 (MQ=255) ggTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATg < 5:370673/149‑1 (MQ=255) gTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATgc < 6:182950/149‑1 (MQ=255) gAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGcgcc > 4:318172/1‑149 (MQ=255) aCTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCAc > 6:59404/1‑112 (MQ=255) aCTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCAc < 5:59404/112‑1 (MQ=255) aCTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGcgccgc < 1:280333/149‑1 (MQ=255) aCCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCgag > 6:90250/1‑148 (MQ=255) aCCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCgag > 1:152448/1‑148 (MQ=255) gAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGAc > 7:350851/1‑131 (MQ=255) gAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGAc < 8:350851/131‑1 (MQ=255) gAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAgaagaa > 7:150536/1‑149 (MQ=255) aCCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCtt < 8:150536/149‑1 (MQ=255) ccccGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTc < 7:78566/149‑1 (MQ=255) cccGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTc > 6:378045/1‑148 (MQ=255) aCGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTg > 1:131649/1‑149 (MQ=255) gagaAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGc < 5:90250/149‑1 (MQ=255) tG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCaccacc > 5:293075/1‑149 (MQ=255) tG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCaccacc > 8:147517/1‑149 (MQ=255) tCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCCCCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACcaccgc > 7:250024/1‑149 (MQ=255) tCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACcaccg > 1:337694/1‑148 (MQ=255) tCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACcaccg > 7:136913/1‑148 (MQ=255) gcgcTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACcaccgcac > 3:257228/1‑149 (MQ=255) gcgcTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACcaccgcac > 2:129855/1‑149 (MQ=255) gcgcTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACcaccgca < 5:378045/148‑1 (MQ=255) ctctTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCaccgcaccgc < 2:337694/149‑1 (MQ=255) cgcgCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGtt < 5:67268/148‑1 (MQ=255) aCCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGAGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCg > 5:266473/1‑149 (MQ=255) aTCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACTGGCGGGCTGGCCACCACCGCACCGCGGTTCGGTCgcag < 2:326665/149‑1 (MQ=255) ccccgagCAGCTCAACGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCgc > 4:358353/7‑146 (MQ=255) ccccgagCAGCTCAACGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCgc < 3:358353/140‑1 (MQ=255) ccgagCAGCTCAACGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCgcagcag > 4:41713/5‑149 (MQ=255) gagCAGCTCAACGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCgcagcagca > 7:328848/3‑149 (MQ=255) gagCAGCTCAACGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCgcagcagca > 5:225554/3‑149 (MQ=255) ccGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGGTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCgcagca < 1:295095/146‑1 (MQ=255) gTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCGCAGCAGCACCACGCttt > 8:108655/1‑149 (MQ=255) gTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCGCAGCAGCACCACGCttt > 2:57597/1‑149 (MQ=255) | ACCAGGCTGCGCTGGAAACTCACCAGCGGCGCATTGCCCGCCGCTTCGGCCAGCTTGAGGTGGAACTCACCGGAAAGGCGGATACCGGCACCCCGGTCACCGCACGAGAAGCTG‑TCGCGCTCTTCGCGCACCATCTGCCGCAGCTCGTTGA‑GCTGCTCGGGGGTGGCATGCTGCACCGCCAGCTCGGTGATGGCGCGTTCGACCATGCGCCGCGAGAAGAACACCTGGCGCGCCTCTTCGACGGTCGGGCTGGCCACCACCGCACCGCGGTTCGGTCGCAGCAGCACCACGCTTT > NC_002947/4874024‑4874318 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |