| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,905,499 | C→T | 7.2% | intergenic (‑93/+35) | PP_4313 ← / ← PP_4314 | peptidylprolyl isomerase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,905,499 | 0 | C | T | 7.2% | 243.7 / 6.1 | 83 | intergenic (‑93/+35) | PP_4313/PP_4314 | peptidylprolyl isomerase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (39/38); new base T (3/3); total (42/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.37e-01 | |||||||||||
GGCAGCTTTGCCGTCTCCCTCGACCAGGTCGATGATCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCGAAATCCCAGGCTT > NC_002947/4905353‑4905646 | ggCAGCTTTGCCGTCTCCCTCGACCAGGTCGATGATCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGcc > 3:71874/1‑148 (MQ=255)ggCAGCTTTGCCGTCTCCCTCGACCAGGTCGATGATCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGcc > 2:229084/1‑148 (MQ=255) tttGCCGTCTCCCTCGACCAGGTCGATGATCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGa > 5:23307/1‑148 (MQ=255) tGCCGTCTCCCTCGACCAGGTCGATGATCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGa < 6:23307/146‑1 (MQ=255) tGCCGTCTCCCTCGACCAGGTCGATGATCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑At < 8:215044/148‑1 (MQ=255) ccGTCTCCCTCGACCAGGTCGATGATCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGc < 7:102772/148‑1 (MQ=255) tcCCTCGACCAGGTCGATGATCTGCAGTTCTTGGCTCATGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCg > 4:363013/1‑148 (MQ=255) gACCAGGTCGATGATCTGCAGTTCTTGGCTCATGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAg < 3:363013/147‑1 (MQ=255) gACCAGGTCGATGATCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGa < 6:68538/148‑1 (MQ=255) cAGGTCGATGATCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACAt > 2:65766/1‑148 (MQ=255) gatgatCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGtt < 7:162892/148‑1 (MQ=255) tCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAAt > 5:98369/1‑147 (MQ=255) tCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAAt > 7:128656/1‑147 (MQ=255) tCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCAGTACAGACATGACGTTGAATc > 1:166167/1‑148 (MQ=255) gCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATTCCGTCGGC‑GA‑ATGCCTcc > 4:52222/1‑124 (MQ=38) gCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATTCCGTCGGC‑GA‑ATGCCTcc < 3:52222/124‑1 (MQ=38) gCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCt > 6:59446/1‑149 (MQ=255) ttCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACa < 6:250383/125‑1 (MQ=255) ttCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACa > 5:250383/1‑125 (MQ=255) cTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGACATGCCTCGGTACAGACATGACGTTGAATCAGCTGTTc < 1:65766/148‑1 (MQ=255) ttGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGc > 2:30399/1‑149 (MQ=255) ttGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGc > 3:269941/1‑149 (MQ=255) tCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGaa > 5:67581/1‑149 (MQ=255) tCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATACCTCCGTACAGACATGACGTTGAATCAg < 5:325291/135‑1 (MQ=255) tCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATACCTCCGTACAGACATGACGTTGAATCAg > 6:325291/1‑135 (MQ=255) aCGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGTA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGaa < 5:192693/147‑1 (MQ=255) cacTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCtt < 4:269941/148‑1 (MQ=255) acTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTgg > 6:307330/1‑149 (MQ=255) tCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGcc > 6:310362/1‑149 (MQ=255) tCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGcc > 1:226469/1‑149 (MQ=255) ccAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCg > 4:105075/1‑149 (MQ=255) aaCGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGAc < 4:71874/149‑1 (MQ=255) gAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTc > 1:284680/1‑124 (MQ=255) gAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTc < 2:284680/124‑1 (MQ=255) aaaaaCAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCt < 5:59446/149‑1 (MQ=255) aaaaaCAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCt < 1:229084/149‑1 (MQ=255) aaacaaaacCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTg < 6:67581/149‑1 (MQ=255) aaacaaaacCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTg > 2:237094/1‑149 (MQ=255) caaaacCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTg < 1:108502/146‑1 (MQ=255) caaaacCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTg > 2:108502/1‑146 (MQ=255) gCCCTTTTCTCAGGAATGGACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTgg > 1:18158/1‑149 (MQ=255) cccTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGc < 5:307330/149‑1 (MQ=255) ccTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCg > 1:112581/1‑125 (MQ=255) ccTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCg < 2:112581/125‑1 (MQ=255) ccTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGc > 5:187664/1‑148 (MQ=255) ttttCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTc < 3:156993/138‑1 (MQ=255) ttttCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTc > 4:156993/1‑138 (MQ=255) ttCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAg < 6:187664/148‑1 (MQ=255) tctcAGGAATGCATCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAg < 7:23062/147‑1 (MQ=255) tctcAGGAATGCATCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAg > 8:23062/1‑147 (MQ=255) tctcAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGc < 6:305138/148‑1 (MQ=255) tcAGGAATGGAGCGGTTTGGCAAGTTCACGCATAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGt < 2:166167/149‑1 (MQ=255) tcAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACAt > 5:204637/1‑78 (MQ=255) tcAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACAt < 6:204637/78‑1 (MQ=255) aGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTAc > 8:83475/1‑149 (MQ=255) aGGAATGCACCGGTTTGGCAACATCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTAc > 8:332707/1‑149 (MQ=255) aaTGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCAc < 8:128656/149‑1 (MQ=255) cACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCgg < 7:152327/149‑1 (MQ=255) aCCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCTCGCggg < 2:226469/149‑1 (MQ=255) aCCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGATCGAA‑‑CACCTCTTGGCCGGACAGATCCTTGGTCTCATTGGCGAAGCAGTACCACGCggg > 3:156669/1‑149 (MQ=255) aCCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGAAGGA‑ATTCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGATCGAA‑‑AACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCggg > 2:190248/1‑149 (MQ=255) tGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTCATTGGCGAAGCAGTACCACGCGGGTTtctc < 1:30399/148‑1 (MQ=255) gCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTc < 6:98369/149‑1 (MQ=255) aCGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTgg < 4:103361/113‑1 (MQ=255) aCGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTgg > 3:103361/1‑113 (MQ=255) gCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAa‑‑c < 4:115058/77‑1 (MQ=255) gCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAa‑‑c > 3:115058/1‑77 (MQ=255) cAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCt < 3:105075/149‑1 (MQ=255) ttGTACGGAGGCATT‑CGCCGACGTA‑ATGCCTCCGTACAGACATGACGTTGAATCATCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAgg < 7:332707/149‑1 (MQ=255) aCGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAAGGAACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTc > 1:110840/1‑149 (MQ=255) aCGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCg > 8:134339/1‑148 (MQ=255) cGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCGa > 1:181783/1‑148 (MQ=255) ggAGGCATTCCGTCGGC‑GA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTgg > 3:246898/1‑74 (MQ=21) ggAGGCATTCCGTCGGC‑GA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTgg < 4:246898/74‑1 (MQ=21) ggAGGCATTCCGTCGGC‑GA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTc > 2:293609/1‑127 (MQ=39) ggAGGCATTCCGTCGGC‑GA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTc < 1:293609/127‑1 (MQ=39) aGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCGAAATc > 6:32168/1‑149 (MQ=255) aGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCGAAATc > 4:6640/1‑149 (MQ=255) cATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCGAAATCCCa < 3:6640/149‑1 (MQ=255) cATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCGAAATCCCa < 5:32168/149‑1 (MQ=255) aTT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTg < 7:257158/133‑1 (MQ=255) aTT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTg > 8:257158/1‑133 (MQ=255) tt‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCGAAATCCCAgg > 1:162632/1‑149 (MQ=255) gCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCGAAATCCCAGGCtt < 2:18158/149‑1 (MQ=255) gCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCGAAATCCCAGGCtt > 8:220193/1‑149 (MQ=255) | GGCAGCTTTGCCGTCTCCCTCGACCAGGTCGATGATCTGCAGTTCTTGGCTCACGGGTACACTCCAAACGCTGAAAAACAAAACCGCCCTTTTCTCAGGAATGCACCGGTTTGGCAAGTTCACGCAGAATTGTACGGAGGCATT‑CGCCGACGGA‑ATGCCTCCGTACAGACATGACGTTGAATCAGCTGTTCTGCTCGAA‑‑CACCTCTTGGCCGGACAGCTCCTTGGTCTGATTGGCGAAGCAGTACCACGCGGGTTTCTCTTCGACGAAGATCTGCAGGTCGAAATCCCAGGCTT > NC_002947/4905353‑4905646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |