| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,971,955 | C→G | 7.3% | intergenic (‑390/+27) | PP_4379 ← / ← flgL | 3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,971,955 | 0 | C | G | 7.3% | 217.3 / 5.9 | 68 | intergenic (‑390/+27) | PP_4379/flgL | 3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL |
| Reads supporting (aligned to +/- strand): ref base C (30/33); new base G (3/2); total (33/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 | |||||||||||
GCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGCCAATGG > NC_002947/4971809‑4972103 | gcACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCgcag < 3:250134/149‑1 (MQ=255)gcACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCgcag < 6:44202/149‑1 (MQ=255) aCTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCgcagca < 4:68055/149‑1 (MQ=255) cTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGcagcag > 6:342469/1‑149 (MQ=255) gACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGccc > 5:263290/1‑149 (MQ=255) ccccGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGGCTGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGcccc < 1:96771/149‑1 (MQ=255) ccccGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCACGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCa < 6:273511/149‑1 (MQ=255) gAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGa > 6:292111/1‑148 (MQ=255) gAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGAt > 4:353302/1‑149 (MQ=255) gAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCGTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGAt > 2:325139/1‑149 (MQ=255) gAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACAAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCTGCGCAGccctatcgc < 2:131393/149‑7 (MQ=38) aTGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATca < 5:190569/149‑1 (MQ=255) aTGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATca < 3:353302/149‑1 (MQ=255) aTGATCACCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATca < 6:167451/149‑1 (MQ=255) tCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATca < 5:211722/145‑1 (MQ=255) tCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATca > 6:211722/1‑145 (MQ=255) aGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATcaggcag < 3:78390/148‑1 (MQ=255) gCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCaggcaggc < 1:226145/149‑1 (MQ=255) gCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCAACCACCAGA‑AGACAGGACGACATGTGGGGGCGTTGTGTCCCGATAGGCCTGCGCAGCAGCCCAAGGATaaggcagc > 8:36619/1‑147 (MQ=37) gcagcaGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGAt > 6:8752/1‑148 (MQ=255) gcagcaGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGAt < 4:92744/148‑1 (MQ=255) cagcagATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTa < 3:57736/149‑1 (MQ=255) cagATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGAt < 4:119325/149‑1 (MQ=255) agATTTCGATGGGGCCGCATCGGGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCGTTGTGTCGCTATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATc < 5:33978/149‑1 (MQ=255) gATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCGACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTc > 1:262970/1‑148 (MQ=255) gggCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGGAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAg > 5:322918/1‑149 (MQ=255) ggCCGCATGGCGGGCCGTTCGCGACGCAATGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAgg < 7:36619/149‑1 (MQ=255) gCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCt > 7:1649/1‑147 (MQ=255) gatgcgGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGc > 3:28201/4‑149 (MQ=255) aTCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGc > 5:209360/1‑149 (MQ=255) gcgGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTGCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTga < 5:292111/149‑1 (MQ=255) gcgGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTga < 7:52062/149‑1 (MQ=255) cgGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATcaggc < 8:321552/113‑1 (MQ=255) cgGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATcaggc > 7:321552/1‑113 (MQ=255) ggCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTgaga < 6:20506/149‑1 (MQ=255) tttCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGt > 8:322146/1‑125 (MQ=255) tttCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGt < 7:322146/125‑1 (MQ=255) tCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATgc < 6:322918/147‑1 (MQ=255) gcgACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATgcgcg > 5:150177/1‑148 (MQ=255) gcgACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATgcgcg > 7:186127/1‑148 (MQ=255) cgACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCa < 2:262970/149‑1 (MQ=255) cAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGc < 6:263290/149‑1 (MQ=255) cTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGACCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGc > 1:241881/1‑148 (MQ=255) cc‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGACCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGaa < 2:241881/148‑1 (MQ=255) c‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGc < 5:342469/149‑1 (MQ=255) c‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGc > 6:370984/1‑149 (MQ=255) gAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTc < 3:16267/149‑1 (MQ=255) aTACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCaa < 5:8752/149‑1 (MQ=255) aCCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGc < 6:209360/149‑1 (MQ=255) aCCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGc > 8:219857/1‑149 (MQ=255) tCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCctg > 6:194819/1‑149 (MQ=255) cAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCctgct > 2:272449/1‑149 (MQ=255) cAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCctg > 4:368434/1‑147 (MQ=255) cAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCctg < 3:368434/147‑1 (MQ=255) g‑agagaGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCctgctg > 1:95257/1‑147 (MQ=255) gagagGACGACGTGTGGGGGCGTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAgg < 1:325139/149‑1 (MQ=255) acgacCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGc > 7:37507/1‑149 (MQ=255) ccTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGaa < 6:150177/149‑1 (MQ=255) tgGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAAtg < 6:17481/147‑1 (MQ=255) ggggCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAAtggtg < 1:272449/148‑1 (MQ=255) gCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGcc > 7:119053/1‑148 (MQ=255) gCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTAAGCTGAATGGTGGcc > 3:15161/1‑148 (MQ=255) ttGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAgg > 6:218379/1‑149 (MQ=255) cgATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCa < 8:37507/149‑1 (MQ=255) ctggggCTGCTGCGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAg > 7:37948/4‑148 (MQ=255) ctggggCTGCTGCGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAg > 5:95202/4‑148 (MQ=255) tggggCTGCTGCGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAAtggtg > 5:245890/3‑131 (MQ=255) tggggCTGCTGCGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAAtggtg < 6:245890/129‑1 (MQ=255) ggCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCAt < 2:45114/100‑1 (MQ=255) ggCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCAt > 1:45114/1‑100 (MQ=255) gCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGc > 2:80319/1‑149 (MQ=255) tGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAAGCAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGc > 1:268391/1‑148 (MQ=255) cgcAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGGCGAGGCCATGTCAGTATCGCCAAt < 8:1649/149‑1 (MQ=255) cgcAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGCCAAt < 3:154630/149‑1 (MQ=255) gcagcaGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGTGGCCATGTCAGTATCGCCAATg > 8:244739/1‑149 (MQ=255) gcagcaGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGCCAATg < 8:186127/149‑1 (MQ=255) gcagcaGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGCCAATg < 4:28201/149‑1 (MQ=255) cagcagCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGTGGCCATGTCAGTATCGCCAATgg < 7:244739/149‑1 (MQ=255) | GCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCC‑ACGAATACGCCACCTCCAGG‑AGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAA‑CAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGCCAATGG > NC_002947/4971809‑4972103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |