| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,002,528 | A→T | 6.2% | I105F (ATT→TTT) | PP_4409 → | site‑specific recombinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,002,528 | 0 | A | T | 6.2% | 249.2 / 5.3 | 80 | I105F (ATT→TTT) | PP_4409 | site‑specific recombinase |
| Reads supporting (aligned to +/- strand): ref base A (40/35); new base T (2/3); total (42/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.87e-01 | |||||||||||
ACATAATGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGAAAAGCC > NC_002947/5002386‑5002673 | aCATAATGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGc > 3:108023/1‑148 (MQ=255) aTAATGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGaa < 1:16265/149‑1 (MQ=255) aaTGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGc < 8:142875/149‑1 (MQ=255) tGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCATTTCTACAGTTGTTCGCAAAATTTGCGAAGCt > 3:63397/1‑148 (MQ=255) gCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAATTTTGCGaacaa > 5:329566/1‑144 (MQ=255) gCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAATTTTGCGaacaa < 6:329566/147‑4 (MQ=255) ccAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAATTTTGCGaacaactg < 8:161805/149‑7 (MQ=255) ccAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTaaa < 6:135602/149‑1 (MQ=255) aCTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCA‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCg > 6:10170/1‑149 (MQ=255) ttCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTc > 1:137264/1‑149 (MQ=255) aCTTCTTCGAAGAAGGTATCAATCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATg < 8:212929/149‑1 (MQ=255) cttcttCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATgg > 1:78924/1‑149 (MQ=255) ttcttcGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGt < 2:333849/149‑1 (MQ=255) cttcGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTcc > 7:14477/1‑139 (MQ=255) cttcGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTcc < 8:14477/139‑1 (MQ=255) ttcGAAGAAGGTCTCATGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAg > 3:158224/1‑149 (MQ=255) ttcGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAg > 7:117491/1‑149 (MQ=255) gaagaaGGTCTCAAGCATATTGAGCCGAGAAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAACCAc > 8:26139/1‑149 (MQ=255) agaagGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACgg > 8:139519/1‑149 (MQ=255) agaagGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACgg > 7:177484/1‑149 (MQ=255) ctcAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCAc > 5:373549/1‑140 (MQ=255) ctcAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCAc < 6:373549/140‑1 (MQ=255) aaGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATg < 3:298370/129‑1 (MQ=255) tatTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGc < 5:380215/103‑1 (MQ=255) tatTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGc > 6:380215/1‑103 (MQ=255) tatTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAat < 4:108023/149‑1 (MQ=255) ttGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGAAAGCACGGCATCGTCAAAAAAatat > 8:228055/1‑149 (MQ=255) aGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCa < 8:117491/148‑1 (MQ=255) aGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCa < 4:304077/148‑1 (MQ=255) gAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCCTCGTCAAAAAAATATCACGCt > 6:197204/1‑148 (MQ=255) gCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCaa < 6:29832/149‑1 (MQ=255) tCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑c > 1:308277/1‑147 (MQ=255) tCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑c > 4:278311/1‑147 (MQ=255) tCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCa < 7:26139/149‑1 (MQ=255) acacCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCt > 5:46709/1‑148 (MQ=255) acCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTg > 6:344832/1‑147 (MQ=255) ccTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAg > 2:79594/1‑136 (MQ=255) ccTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAg < 1:79594/136‑1 (MQ=255) ccTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAaga < 7:139519/149‑1 (MQ=255) tGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGc > 6:317517/1‑149 (MQ=255) aTCGAGAGTATCACTCATACTTGACAGTTGGCAGCA‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCt < 5:10170/148‑1 (MQ=255) gagaGTATCACTCATACTTGACAGTTGGCAGCGACGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTgg > 1:43591/1‑149 (MQ=255) gagTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTaa < 2:78924/149‑1 (MQ=255) aCTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTc > 2:100700/1‑149 (MQ=255) cTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTcc < 5:344832/149‑1 (MQ=255) cTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTc > 4:284700/1‑148 (MQ=255) tCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCGCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTc > 5:375693/1‑147 (MQ=255) tCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGTCCCAGCCTTTCCTGAAGAGCCTTGGTaa < 1:192199/141‑1 (MQ=255) tCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTaa > 2:192199/1‑140 (MQ=255) tCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTc > 4:163584/1‑147 (MQ=255) tCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CAAGCATTTCCTGAAGAGCCTTGGTAATTACTTcc > 1:156675/1‑148 (MQ=255) aCTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGaaa > 5:243644/1‑149 (MQ=255) cTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAAt < 8:177484/149‑1 (MQ=255) ttGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAAcc > 5:371492/1‑59 (MQ=255) ttGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAAcc < 6:371492/59‑1 (MQ=255) ttGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATa > 2:293011/1‑149 (MQ=255) ttGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATa > 6:342781/1‑149 (MQ=255) ttGACAGTTGGCAGCG‑AGAGCAATTCAAGAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCACCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGAACAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTATTTACTTCCAGAAAt > 1:209563/1‑148 (MQ=255) gACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATAc > 2:285487/1‑148 (MQ=255) aCAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACa > 3:184812/1‑148 (MQ=255) ttGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGac > 2:293488/1‑149 (MQ=255) tGGGAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGac < 5:280043/148‑1 (MQ=255) cAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGactact < 4:184812/149‑1 (MQ=255) gcg‑cGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTACCTGAAGAGACTTGGTAATTACTTCCAGAAATACAAAGactact > 5:190997/1‑147 (MQ=255) cAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACg > 5:84943/1‑149 (MQ=255) aaTTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATTTCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACgg > 5:185440/1‑149 (MQ=255) aaCAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTg < 5:342781/148‑1 (MQ=255) tttttCTCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCAGGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAAtt < 2:156675/146‑1 (MQ=255) ttgttCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAAtt < 2:43591/149‑1 (MQ=255) ttgttCGCAAAATTTGCGAAGCTAAACCGTCCCCAATCGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAAtt < 4:63397/149‑1 (MQ=255) tgttCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAAtt < 4:158224/148‑1 (MQ=255) tgttCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAAtt < 1:293011/148‑1 (MQ=255) tgttCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAAtt < 6:243644/148‑1 (MQ=255) cttCGCAAATTTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTg > 4:244701/2‑148 (MQ=255) gCAAATTTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGaaaa < 3:244701/148‑1 (MQ=255) gCAAAATTTGCGAATCTAAACCGTCCCCAATTGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGAAAAg < 7:228055/149‑1 (MQ=255) gCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGaaaa < 2:308277/148‑1 (MQ=255) cAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTg < 7:188570/136‑1 (MQ=255) cAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTg > 8:188570/1‑136 (MQ=255) cAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGAAAAGc < 2:137264/149‑1 (MQ=255) aaaaTTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGAAAAGcc > 1:221620/1‑149 (MQ=255) aaaaTTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGAAAAGc < 1:285487/148‑1 (MQ=255) | ACATAATGCCAACTTCATCGACTTCTTCGAAGAAGGTCTCAAGCATATTGAGCCGAGCAAATCCGAAGTAAACACCCTGTATCGAGAGTATCACTCATACTTGACAGTTGGCAGCG‑CGAGCAATTCAACAGTTGTTCGCAAAATTTGCGAAGCTAAACCGTCCCCAATGGTAAGCACGGCATCGTCAAAAAAATATCACGCTCAAGT‑CCAGCCTTTCCTGAAGAGCCTTGGTAATTACTTCCAGAAATACAAAGACTACTGCGAGAACGGGCTGGTAATTGAAAAGCC > NC_002947/5002386‑5002673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |