Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 425,348 | A→C | 9.8% | intergenic (‑39/+18) | PP_0349 ← / ← PP_0350 | membrane protein/ferrichrome‑iron receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 425,348 | 0 | A | C | 9.8% | 155.1 / 6.6 | 58 | intergenic (‑39/+18) | PP_0349/PP_0350 | membrane protein/ferrichrome‑iron receptor |
Reads supporting (aligned to +/- strand): ref base A (26/26); new base C (3/3); total (29/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 |
AGATAAGGGGCAGGCCGGTGACTGCCAGCAACAGCAGGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCGGTGACCGCGACCGACGCGCC > NC_002947/425204‑425491 | aGATAAGGGGCAGGCCGGTGACTGCCAGCAACAGCAGGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCTATTGTTGTCGGTTGGAACCCGGGGCCGCAAggc < 1:237580/149‑1 (MQ=255) aGGGGCAGGCCGGTGACTGCCAGCAACAGCAGGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGcc < 6:304905/148‑1 (MQ=255) gggCAGGCCGGTGACTGCCAGCAACAGCAGGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGccc > 7:257396/1‑147 (MQ=255) ggCAGGCCGGTGACTGCCAGCAACAGCAGGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGATGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCCTTGCGGccccgg < 8:44690/149‑3 (MQ=255) cAGGCCGGTGACTGCCAGCAACAGCAGGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGct > 8:271571/1‑149 (MQ=255) cGGTGACTGCCAGCAACAGCAGGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCCGctgcctc > 2:271136/1‑144 (MQ=255) ggTGACTGCCAGCAACAGCAGGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGctcact > 4:273982/1‑147 (MQ=255) aaCAGCAGGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTg > 3:284368/1‑149 (MQ=255) gcagGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGaa < 4:44045/135‑1 (MQ=255) gcagGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGaa > 3:44045/1‑135 (MQ=255) ggAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTgg > 4:248346/1‑149 (MQ=255) aGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTgc < 3:273982/149‑1 (MQ=255) aGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTgc > 2:236089/1‑149 (MQ=255) gACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTgcg < 1:46541/149‑1 (MQ=255) aCCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTgcgc < 8:203868/149‑1 (MQ=255) aCCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTgcgc > 7:108277/1‑149 (MQ=255) cAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACaa > 7:118699/1‑139 (MQ=255) cAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACaa < 8:118699/139‑1 (MQ=255) gctgctCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGCCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCCCCACGCGGCCCCCGCACACACCGAACAAGTAAGTTGCGCTGGCGGCAACCCTGCGCGCaac > 6:240038/1‑147 (MQ=255) ctCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGcc < 4:284368/148‑1 (MQ=255) ctCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCg < 7:271571/149‑1 (MQ=255) tCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCt > 3:307594/1‑135 (MQ=255) tCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCt < 4:307594/135‑1 (MQ=255) gtgtGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGtagtag > 8:19138/1‑149 (MQ=255) gtgtGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGtagtag > 7:193136/1‑149 (MQ=255) gATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGc > 5:116663/1‑116 (MQ=255) gATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGc < 6:116663/116‑1 (MQ=255) ggACGAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGa < 5:240038/149‑1 (MQ=255) ggACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGa < 8:193136/149‑1 (MQ=255) aCCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGACCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGt > 6:161852/1‑149 (MQ=255) cAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTca < 6:380021/149‑1 (MQ=255) cggATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTa < 7:19138/149‑1 (MQ=255) tggGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCCCCACACTCAGAAATTGTAATTGGCGCTGGCGACAACGCTGCGCTCAAAGCCGTAGTAGGAGTAGTAGGAGTCACAAGTAGAGAgg > 4:39472/1‑148 (MQ=255) tggGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAgg > 1:331746/1‑148 (MQ=255) ctctTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGACCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATcc < 5:161852/149‑1 (MQ=255) tctTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAAAGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCt > 1:285431/1‑149 (MQ=255) catcaCGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTTGCGACAACGCTGCGGACATCGCCGTAGTAGCAGTAGTAGGAGTGACAAGTAGAGAGGTTATCCATGt > 8:33059/1‑148 (MQ=255) tcaCGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTca < 1:236089/149‑1 (MQ=255) ccGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTtg < 3:39472/149‑1 (MQ=255) gATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTagagag < 1:237071/125‑1 (MQ=255) gATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTagagag > 2:237071/1‑125 (MQ=255) gATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTtggt > 8:85469/1‑149 (MQ=255) gATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTtggt < 3:248346/149‑1 (MQ=255) ttgtCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCg < 7:85469/148‑1 (MQ=255) gtCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTCGCGACAACGCTGCGCTCATCGCCGTAGTAGAAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCGGt > 8:187592/1‑148 (MQ=255) gagctggggCCGCCTTGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTg > 5:121221/6‑119 (MQ=255) gagctggggCCGCCTTGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTg < 6:121221/114‑1 (MQ=255) aaCCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCGGTGACCGcgacc < 2:331746/149‑1 (MQ=255) ctggggCCGCCTTGCGGCCCCGGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGt > 3:31307/3‑126 (MQ=255) ctggggCCGCCTTGCGGCCCCGGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGt < 4:31307/124‑1 (MQ=255) ccGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTagag > 7:290395/1‑104 (MQ=255) ccGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTagag < 8:290395/104‑1 (MQ=255) ccGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCGGTGACCGcgaccgac < 8:257396/149‑1 (MQ=255) gCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCGGTGACCGCGACCGACGCGcc > 7:331100/1‑149 (MQ=255) ccGCAAGGCGGCCCCAGCTCACTCAGAACTTTTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCGGTGACCGcga < 1:124432/138‑1 (MQ=255) ccGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCGGTGACCGcga > 2:124432/1‑138 (MQ=255) gCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCGGTGACCGcgaccgac < 6:323712/141‑1 (MQ=255) gCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCGGTGACCGcgaccgac > 5:323712/1‑141 (MQ=255) | AGATAAGGGGCAGGCCGGTGACTGCCAGCAACAGCAGGAACAGGGTACAGACCAGGCTGCTCCAGGTGTGGATCAAGGACCAGCGGCGGATGGTGGGGCTCTTCATCACGGTACCGATTGTTGTCGGTTGGAACCCGGGGCCGCAAGGCGGCCCCAGCTCACTCAGAACTTGTAAGTGGCGCTGGCGACAACGCTGCGCTCATCGCCGTAGTAGCAGTAGTAGGAGTCACAAGTAGAGAGGTAATCCTTGTTCAGCAGGTTGGTGGCGGTGACCGCGACCGACGCGCC > NC_002947/425204‑425491 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |