Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,104,809 | C→T | 7.0% | I345I (ATC→ATT) | yhhS → | carbohydrate efflux transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,104,809 | 0 | C | T | 7.0% | 165.1 / 2.6 | 57 | I345I (ATC→ATT) | yhhS | carbohydrate efflux transporter |
Reads supporting (aligned to +/- strand): ref base C (25/28); new base T (2/2); total (27/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01 |
GCACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAG > NC_002947/5104663‑5104955 | gcACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGa > 4:130000/1‑149 (MQ=255) gcACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCAGTGGGCGTGGAGGCAGTGAACCAAGTCTCGGCGGCTAACCGGGGGGAGGCGGTGGGGG‑CGTATTCGCTGTTCATCGa > 8:111190/1‑149 (MQ=255) cACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGAc < 6:118875/149‑1 (MQ=255) cACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGAc > 5:138697/1‑149 (MQ=255) aaCGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGt > 1:361197/1‑148 (MQ=255) aCGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCa < 8:3495/149‑1 (MQ=255) gCCGAACTGGCCTTGGCGCGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGATCCAAGTGTCGGCGGCTAACCGCGGGGCGGCTGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACt > 5:302677/1‑149 (MQ=255) ccGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTg < 3:130000/149‑1 (MQ=255) aaCTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTgggg < 8:342869/149‑1 (MQ=255) aaCTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTAACTgggg > 4:30932/1‑149 (MQ=255) cggCGTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGt < 1:181896/147‑1 (MQ=255) ggCCTTGGCGGGGGCTGCATTGAGCGGGGTTGGTTTCTCGCTGGTGTTTCCGGCCTTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGGATTCGCTGTTCATCGCCTTGTCACTGGGGGTGa < 6:312098/149‑1 (MQ=255) ggCGTGGGCTGCATTTAGAGGGTTGGGTTTCTCGCTGGTGTTTGCGGCATTGGGCGGGGATGCATTGAAGCAAGTGTCGGCGGCTAAGCGCGGTGCGGGGGTGGGGT‑CGTATTCGCTGTTCATCGACTTGTCACTGTGGGTGACCtgg < 3:20258/148‑1 (MQ=255) ggCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATTGACTTGTCACTGGGGGTGACCGGGc > 4:96354/1‑149 (MQ=255) cATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTcggt < 7:17457/149‑1 (MQ=255) gtttggtttCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTggcgg > 3:227110/1‑149 (MQ=255) tttggtttCTCGCTGGTGTTTCCGGCATGGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGGCCTTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTggcgg < 1:292229/149‑1 (MQ=255) ggtttCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGTCTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGcggcgg < 1:269436/148‑1 (MQ=255) tctcGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTc > 1:178176/1‑149 (MQ=255) tctcGCTGGTGTTTCAGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCCGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACAGCGGGTGACAGGGCCATTGGTCGGAGCGGTCGCGGCGGGGTTc > 2:115280/1‑149 (MQ=255) ctcGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATTGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTc < 3:96354/148‑1 (MQ=255) gtgtTTCCGGCATTGGGCGGGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTGATCGTCTTGTCACTGGGGGTGACCGGGCCTTTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGc < 7:111190/149‑1 (MQ=255) gtTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGc > 8:100410/1‑142 (MQ=255) gtTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGc < 7:100410/142‑1 (MQ=255) tttCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTc > 4:366812/1‑149 (MQ=255) ccGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGa < 2:178176/148‑1 (MQ=255) ccGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGAt > 7:117349/1‑149 (MQ=255) cGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTcggt > 8:1611/1‑116 (MQ=255) cGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTcggt < 7:1611/116‑1 (MQ=255) cGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATg > 4:53557/1‑149 (MQ=255) ctttGGGCGTGGAGGCTGTGAACCAAGTGTCGTCGGCTAACCGCGGGGGGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGTGGTGACCGGGCGATTGGTCGGTGCGGTGGGGGCGGGGTTCGGCTTTGCTTCGATtttt < 6:151164/147‑1 (MQ=255) gggctGGATGCAGTTAACCAAGTGGCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGt < 6:138697/144‑1 (MQ=255) ggCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGtt < 4:227110/149‑1 (MQ=255) gCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTc < 5:210849/125‑1 (MQ=255) gCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGCCCATTGGTCGGTGCGGTGGCGGCGGGGTTc > 6:210849/1‑125 (MQ=255) tGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCg > 1:261816/1‑149 (MQ=255) aGTGTCGTCGGCTAACCGGGGGGCGGCGTTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGt < 8:117349/149‑1 (MQ=255) cggcTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTg < 2:261816/149‑1 (MQ=255) gcTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGgt < 3:366812/149‑1 (MQ=255) cTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGgtg > 6:322466/1‑149 (MQ=255) aaCCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCa < 3:49891/132‑1 (MQ=255) aaCCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCa > 4:49891/1‑132 (MQ=255) ccGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGtt > 6:246520/1‑147 (MQ=255) gggCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCctc > 8:258110/1‑149 (MQ=255) gcggTGGGGG‑CGTATTCGCTGTTCATTGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCgg > 4:78616/1‑128 (MQ=255) gcggTGGGGG‑CGTATTCGCTGTTCATTGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCgg < 3:78616/128‑1 (MQ=255) ggg‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTcg < 6:42701/99‑1 (MQ=255) g‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCgcgg < 3:130032/100‑1 (MQ=255) g‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCgcgg > 4:130032/1‑100 (MQ=255) tATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAgg > 6:28258/1‑149 (MQ=255) cGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCaa < 5:185500/143‑1 (MQ=255) cGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCaa > 6:185500/1‑143 (MQ=255) tGTTCATCGACTTGTCACTGTGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTagg < 3:30932/149‑1 (MQ=255) cATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTaggga > 8:218342/1‑147 (MQ=255) aTCGAGTTGTCTCTGGTGGTGTCCGGTCCATTGGTGGGTGCGGTGCCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGTGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTagggacag < 6:302677/149‑1 (MQ=255) aTCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGa > 5:106122/1‑115 (MQ=255) aTCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGa < 6:106122/115‑1 (MQ=255) | GCACCCAACGCCGAACTGGCCTTGGCGGGGGCTGCATTGAGCGGGTTTGGTTTCTCGCTGGTGTTTCCGGCATTGGGCGTGGAGGCAGTGAACCAAGTGTCGGCGGCTAACCGCGGGGCGGCGGTGGGGG‑CGTATTCGCTGTTCATCGACTTGTCACTGGGGGTGACCGGGCCATTGGTCGGTGCGGTGGCGGCGGGGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAG > NC_002947/5104663‑5104955 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |