Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,160,633 | A→G | 9.7% | L141P (CTG→CCG) | PP_4543 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,160,633 | 0 | A | G | 9.7% | 135.3 / 5.6 | 52 | L141P (CTG→CCG) | PP_4543 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (21/25); new base G (2/3); total (23/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-01 |
TTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCGGGCAACAGCG > NC_002947/5160488‑5160780 | ttCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGcc > 1:347412/1‑149 (MQ=255) catccaCCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTg > 5:132908/1‑149 (MQ=255) atccaCCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCGAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTgg > 5:6361/1‑149 (MQ=255) tccaCCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTggg < 1:245333/149‑1 (MQ=255) tccaCCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTggg < 4:318622/149‑1 (MQ=255) aCCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCg > 5:183068/1‑149 (MQ=255) ccAGGCAGGACCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTGGCCCAGATACTCCGGCAGGGCCTGCCGCATCTACAAACCGGCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCt > 5:267655/1‑149 (MQ=255) aggcCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCgg < 1:352214/149‑1 (MQ=255) cGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTg > 4:222195/1‑148 (MQ=255) ccAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAAc < 7:339782/149‑1 (MQ=255) aaCTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCTGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCGGCCCACGGCTGCTGAcgg < 8:250848/139‑3 (MQ=255) aaCTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCGGCCCACGGCTGCTGAcgg > 7:250848/1‑137 (MQ=255) aaCTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACgg < 4:170616/149‑1 (MQ=255) cTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGca < 5:294497/149‑1 (MQ=255) cgcgTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGcaca < 4:226002/148‑1 (MQ=255) ccAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGcc > 3:310791/1‑148 (MQ=255) aGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAg > 1:318450/1‑149 (MQ=255) cGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACgg > 1:136488/1‑132 (MQ=255) cGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACgg < 2:136488/132‑1 (MQ=255) ggTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGtttt < 4:310791/149‑1 (MQ=255) tCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTgg < 6:6361/149‑1 (MQ=255) tCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTgg < 2:347412/149‑1 (MQ=255) cGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTggg < 5:89247/149‑1 (MQ=255) gTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCGGCCCACGGCTGCTGAcgg < 6:103390/115‑3 (MQ=255) gTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCGGCCCACGGCTGCTGAcgg > 5:103390/1‑113 (MQ=255) aaGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGgtagt < 6:132908/148‑1 (MQ=255) aTGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGcac > 6:313949/1‑119 (MQ=255) tgtgCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATa < 1:226824/149‑1 (MQ=255) gcgcTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCg < 5:90584/149‑1 (MQ=255) gcgccGGAAAGCCCACCCTTGCCCAGATCCTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCCGCCGTGGGCCGCTGACCGGGCTGTACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGc < 6:267655/146‑1 (MQ=255) gAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAAGCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTc < 2:8255/149‑1 (MQ=255) gAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCt > 2:169238/1‑148 (MQ=255) gAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCt > 1:49953/1‑148 (MQ=255) gCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACaa < 1:169238/149‑1 (MQ=255) gCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACaa < 3:222195/149‑1 (MQ=255) ccACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACaa > 4:51947/1‑147 (MQ=255) ccACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACaa < 3:51947/147‑1 (MQ=255) ccAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCaa > 7:337886/1‑149 (MQ=255) ggCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACAt < 6:183068/149‑1 (MQ=255) ccTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCg < 3:226842/125‑1 (MQ=255) ccTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCg > 4:226842/1‑125 (MQ=255) ccTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGaa < 6:153090/142‑1 (MQ=255) ccTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGaa > 5:153090/1‑142 (MQ=255) tGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTgg > 7:251809/1‑89 (MQ=255) tGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTgg < 8:251809/89‑1 (MQ=255) cagcaTCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGc < 2:127404/149‑1 (MQ=255) tCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAAc < 2:318450/149‑1 (MQ=255) tCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGGCACtt > 1:80316/1‑149 (MQ=255) gCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCggg > 7:287395/1‑149 (MQ=255) cggTCAGCGGCCCACGGCTGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGc < 4:366432/92‑1 (MQ=38) ccGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCggg > 8:34504/1‑148 (MQ=255) tCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCCGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCGGGCaa > 3:239717/1‑148 (MQ=255) agcagcCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCGGGCAACa < 2:49953/148‑1 (MQ=255) cagcCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCGGGCAACAgcg > 4:173312/1‑149 (MQ=255) | TTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCACCCTTGCCCAGATACTCCGGCAGGGCCTGCAGCATCAACAAACCGTCAGCCGGATCGGCCGTCAGCAGCCGTGGGCCGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCGGGCAACAGCG > NC_002947/5160488‑5160780 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |