Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,532,229 | T→A | 9.5% | K15M (AAG→ATG) ‡ | braE ← | high‑affinity branched‑chain amino acid ABC transporter permease BraE |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,532,229 | 0 | T | A | 9.5% | 146.0 / 4.5 | 52 | K15M (AAG→ATG) ‡ | braE | high‑affinity branched‑chain amino acid ABC transporter permease BraE |
Reads supporting (aligned to +/- strand): ref base T (21/26); new base A (2/3); total (23/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CACCGCCGACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTGTAGTCGGAGTTGATCA > NC_002947/5532083‑5532375 | cacCGCCGACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTg > 5:355997/1‑149 (MQ=255) cgccgACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑tt > 2:12012/1‑149 (MQ=255) ccgACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTc > 8:289244/1‑149 (MQ=255) gACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGc > 2:291450/1‑149 (MQ=255) gACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCAAGGG‑TTTCga < 6:70798/149‑2 (MQ=255) gACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCAAGGG‑TTTCga < 2:346993/149‑2 (MQ=255) gACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCAAGGG‑TTTCga < 2:221056/149‑2 (MQ=255) gccagGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATa < 7:89726/149‑1 (MQ=255) ccagGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTg < 8:97080/136‑1 (MQ=255) ccagGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTg > 7:97080/1‑136 (MQ=255) cagGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACTGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATaga < 1:286590/149‑1 (MQ=255) cgcggcgcggCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGtt < 7:289244/149‑1 (MQ=255) ggcgcggcTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTg < 7:50864/149‑1 (MQ=255) cTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACAACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTTCGCTAATAGAGGCAGTTTTGGCAACg < 1:3983/149‑1 (MQ=255) ggCATTGAAGGTGTAGCCGTCGAGCACCACACAAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGa < 5:218058/147‑1 (MQ=255) aTTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGt > 2:297674/1‑149 (MQ=255) ttGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGtt < 2:123001/149‑1 (MQ=255) aaGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTca > 8:275880/1‑148 (MQ=255) accacaccaACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCggg < 1:12012/149‑1 (MQ=255) ccacaccaACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGc < 6:355997/149‑1 (MQ=255) acaccaACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGa > 6:309816/1‑149 (MQ=255) caACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGAcc > 2:364172/1‑147 (MQ=255) cGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCcagca < 7:275880/149‑1 (MQ=255) ggACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCt > 7:234787/1‑149 (MQ=255) gACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCtt > 7:287644/1‑149 (MQ=255) agacacGATAAGTGCCAGCAGGCCAGCGACACTGGTCTCCAGCAGGCGGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCggg < 6:10687/127‑1 (MQ=255) aaCACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGa < 2:350128/101‑1 (MQ=255) aaCACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGa > 1:350128/1‑101 (MQ=255) acGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCgg < 6:41184/149‑1 (MQ=255) gATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCgg > 1:239506/1‑147 (MQ=255) gATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGaa < 1:297674/149‑1 (MQ=255) aaGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGa > 2:323915/1‑148 (MQ=255) gTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTgg < 4:128272/138‑1 (MQ=255) gTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTgg > 3:128272/1‑138 (MQ=255) gCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGa > 1:319499/1‑119 (MQ=255) gCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGa < 2:319499/119‑1 (MQ=255) agcagGCCAGCGACAATGGTCTCCAGCATGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGatc < 5:274475/149‑1 (MQ=255) agcagGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGatc < 8:287644/149‑1 (MQ=255) gCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAACGATCATCAc > 4:353606/1‑149 (MQ=255) cAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCAc > 3:16485/1‑147 (MQ=255) gTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGaa < 4:16485/148‑1 (MQ=255) tcCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCgag < 3:73367/143‑1 (MQ=255) tcCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCgag > 4:73367/1‑143 (MQ=255) tcCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCt > 7:48359/1‑148 (MQ=255) cagcagGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTg < 5:309816/147‑1 (MQ=255) cagcagGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGaa < 1:364172/149‑1 (MQ=255) cTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATcc < 7:224880/149‑1 (MQ=255) gTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTGGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACAGCCtgg > 8:267186/1‑146 (MQ=255) gTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTGTAGTCGGa < 2:239506/149‑1 (MQ=255) gcGAAACCAAGGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTGTAGTCGGAg > 8:39794/2‑149 (MQ=255) gcGAAACCAAGGG‑ATTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTGTAGTCGGAg > 2:19323/2‑149 (MQ=255) ccTTGG‑TTTCGCTAATATAGGCAGTTTTGGCAACGGACATGTTCACACATTAGCCACGAGCGGGCGACCCAGCAGGCCTTGGGGGGGGATGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTGTAGTCGGAGTTGATCa < 1:291450/149‑1 (MQ=255) | CACCGCCGACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCAGCAGGCCAGCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGG‑TTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTGTAGTCGGAGTTGATCA > NC_002947/5532083‑5532375 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |