Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,570,914 T→G 6.4% C201G (TGC→GGC)  queG → epoxyqueuosine reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,570,9140TG 6.4% 180.5 / 2.2 58C201G (TGC→GGC) queGepoxyqueuosine reductase
Reads supporting (aligned to +/- strand):  ref base T (29/25);  new base G (2/2);  total (31/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCAAAGATGGGCAACCGCGTGTTCGGTT  >  NC_002947/5570770‑5571055
                                                                                                                                                 |                                                                                                                                             
gCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGgcctgcct                                                                                                                                           <  7:241322/149‑1 (MQ=255)
         ggTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTg                                                                                                                                  >  7:64790/1‑149 (MQ=255)
                   gCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTAGAGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGacac                                                                                                                          >  1:124058/1‑148 (MQ=255)
                    cAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAg                                                                                                                       >  7:80202/1‑149 (MQ=255)
                          cacGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTg                                                                                                                 >  7:308611/1‑149 (MQ=255)
                              ctgctgctCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCgg                                                                                                             <  1:241135/149‑1 (MQ=255)
                               tgctgctCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCggg                                                                                                            >  3:7871/1‑149 (MQ=255)
                                       aaCCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTAtgt                                                                                                    >  6:373646/1‑149 (MQ=255)
                                         ccGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGc                                                                                                  <  8:80202/149‑1 (MQ=255)
                                         ccGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGc                                                                                                  <  5:349265/149‑1 (MQ=255)
                                          cGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCt                                                                                                 >  3:283460/1‑149 (MQ=255)
                                            cAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTg                                                                                                >  8:202011/1‑148 (MQ=255)
                                             aaaGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGa                                                                                              <  8:99493/149‑1 (MQ=255)
                                                  gggCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATgcgc                                                                                         <  1:134692/149‑1 (MQ=255)
                                                    gCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGa                                                                                       >  8:296935/1‑149 (MQ=255)
                                                           cttcttCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCa                                                                                >  6:210025/1‑149 (MQ=255)
                                                            ttcttcCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGa                                                                                       <  6:248953/141‑1 (MQ=255)
                                                            ttcttcCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGa                                                                                       >  5:248953/1‑141 (MQ=255)
                                                                 ccTTGCCGAACTGTTCGGCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCg                                                                           <  4:5510/148‑1 (MQ=255)
                                                                         aaCTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTAt                                                                                                      <  1:172768/113‑1 (MQ=255)
                                                                         aaCTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTAt                                                                                                      >  2:172768/1‑113 (MQ=255)
                                                                         aaCTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGa                                                                                       >  8:117558/1‑128 (MQ=255)
                                                                         aaCTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGa                                                                                       <  7:117558/128‑1 (MQ=255)
                                                                            tGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATc                                                               >  4:252949/1‑149 (MQ=255)
                                                                              ttCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATc                                                               >  3:202183/1‑147 (MQ=255)
                                                                              ttCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATc                                                               <  5:210025/147‑1 (MQ=255)
                                                                                 gtcgACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTAt                                                                                                      <  1:305992/105‑1 (MQ=255)
                                                                                 gtcgACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTAt                                                                                                      >  2:305992/1‑105 (MQ=255)
                                                                                 gtcgACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCt                                                          >  6:249652/1‑149 (MQ=255)
                                                                                     aCCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAgg                                                      <  4:7871/149‑1 (MQ=255)
                                                                                     aCCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAgg                                                      >  4:239321/1‑149 (MQ=255)
                                                                                      ccTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAggg                                                     >  6:41753/1‑149 (MQ=255)
                                                                                      ccTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAggg                                                     <  8:308611/149‑1 (MQ=255)
                                                                                         gCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGc                                                           <  2:257554/140‑1 (MQ=255)
                                                                                         gCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGc                                                           >  1:257554/1‑140 (MQ=255)
                                                                                                 cGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCt                                          <  5:41753/149‑1 (MQ=255)
                                                                                                   gTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGt                                        >  4:127047/1‑149 (MQ=255)
                                                                                                      gACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGa                                     <  3:252949/149‑1 (MQ=255)
                                                                                                         gAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGt                                   >  3:64704/1‑148 (MQ=255)
                                                                                                         gAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTCAGGGGCGCGATCCCTGTCGAGt                                   >  6:332172/1‑148 (MQ=255)
                                                                                                           gtccaccaccaGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTAc                                <  5:214835/147‑1 (MQ=255)
                                                                                                           aGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTAc                                <  4:283460/149‑1 (MQ=255)
                                                                                                           aGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTAc                                >  4:191722/1‑149 (MQ=255)
                                                                                                               accaccaGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTAcgcg                             >  7:2196/1‑148 (MQ=255)
                                                                                                                ccaccaGCGTGCAGTGCGGGCGTTGCGAGGCCTGGCTGGACATCTGCCCTACACAAGCGTTTGTCGGGCCCTATGTGCTGGTTGCGCGACGCTGCATCTCTTACCTGACCATCGAGCTGAGGGTCGCTATCCCTGTCGAGTTACTCGCa                           <  4:106112/149‑1 (MQ=255)
                                                                                                                   ccaGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCa                           >  7:76160/1‑146 (MQ=255)
                                                                                                                    caGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTACATCTCGTACCTGACCATCGAGCt                                                          >  1:108077/1‑114 (MQ=255)
                                                                                                                    caGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTACATCTCGTACCTGACCATCGAGCt                                                          <  2:108077/114‑1 (MQ=255)
                                                                                                                     aGCGAGCACTGCGGGCGTTGCCAGGCCGGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCGGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCAAAGAt                      <  8:64790/149‑1 (MQ=255)
                                                                                                                       cGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCAAAGATgg                    <  7:296935/149‑1 (MQ=255)
                                                                                                                       cGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCAAAGATgg                    <  5:373646/149‑1 (MQ=255)
                                                                                                                       cGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCAAAGATgg                    <  3:127047/149‑1 (MQ=255)
                                                                                                                       cGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCAAAGATgg                    >  5:379868/1‑149 (MQ=255)
                                                                                                                        gAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCAAAGATggg                   <  6:379868/149‑1 (MQ=255)
                                                                                                                                    agatgtccAGGCAGGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCAAAGATGGGCAACCGCgtgt        >  6:112661/7‑149 (MQ=255)
                                                                                                                                     gatgtccAGGCAGGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTc                                       >  1:319641/6‑117 (MQ=255)
                                                                                                                                     gatgtccAGGCAGGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTc                                       <  2:319641/112‑1 (MQ=255)
                                                                                                                                       ttGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCAAAGATGGGCAACCGCGTGTTCg     <  8:76160/149‑1 (MQ=255)
                                                                                                                                          ccAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTAGGTGCTGGATGCGCGACGATGCATCTCGTACATGCCCATGGAGCTGAGGGGGGCGAGCCCTGTCGAGTTACGCGCAAATATGGGCAACCCGGGTTTCGGtt  >  3:254489/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                             
GCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAACCGCAAAGCGGGCAGCTACTTCTTCCTTGCCGAACTGTTCGTCGACCTGCCGTTGCCGGTGGACGAAGCCACCACCAGCGAGCACTGCGGGCGTTGCCAGGCCTGCCTGGACATCTGCCCGACACAAGCGTTTGTCGGGCCCTATGTGCTGGATGCGCGACGCTGCATCTCGTACCTGACCATCGAGCTGAGGGGCGCGATCCCTGTCGAGTTACGCGCAAAGATGGGCAACCGCGTGTTCGGTT  >  NC_002947/5570770‑5571055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: