| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,614,063 | C→T | 11.1% | intergenic (+45/+37) | PP_4933 → / ← hldE | hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,614,063 | 0 | C | T | 11.1% | 240.5 / 15.2 | 90 | intergenic (+45/+37) | PP_4933/hldE | hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (37/43); new base T (6/4); total (43/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGCACCCACCAC > NC_002947/5613921‑5614207 | tggtggAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCcag > 5:114844/1‑147 (MQ=255) tggAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCagag > 2:322390/1‑149 (MQ=255) caagcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGgccgcc < 5:355572/149‑1 (MQ=255) aagcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGGGCGGGTTTA‑CCCGCTCcagcaagcag < 7:138253/143‑6 (MQ=255) aagcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGGGCGGGTTTA‑CCCGCTCcagcaagcag < 7:133043/143‑6 (MQ=255) aagcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGGGCGGGTTTA‑CCCGCTCcagcaagcag > 8:138253/1‑138 (MQ=255) aagcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGGGCGGGTTTA‑CCCGCTCcagcaagcag > 8:133043/1‑138 (MQ=255) agcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGccgccg > 4:152996/1‑148 (MQ=255) cGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGAccc < 6:149393/149‑1 (MQ=255) cGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGAccc < 3:166786/149‑1 (MQ=255) gCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGAcccc > 5:47763/1‑147 (MQ=255) cGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAg < 1:73182/149‑1 (MQ=255) gCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTc < 6:139780/148‑1 (MQ=255) gCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTc < 7:78483/148‑1 (MQ=255) aCTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAg > 3:218297/1‑148 (MQ=255) ttGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGAt > 7:191881/1‑148 (MQ=255) aaCGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGt > 8:181546/1‑148 (MQ=255) aCGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGTGCGCGGTCCTCGCTGAACAAGTGACCTCCCGAAAGCTTTCACCTGCTTGCTTGAGCGGGTAAA‑CCCGCCGCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCCGTTc < 5:261600/149‑1 (MQ=255) aCGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTc > 3:13625/1‑149 (MQ=255) cGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCt > 8:18340/1‑149 (MQ=255) cTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTg > 2:40546/1‑149 (MQ=255) cTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTg < 6:114844/149‑1 (MQ=255) cTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTg < 6:222327/149‑1 (MQ=255) tGGCGACAAGGCGCGAGCGCTGCTGGAGGGGGGGCGGTCCTGGCTGATCAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAAGCGCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGc < 1:278082/148‑1 (MQ=255) tGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGc < 7:181546/147‑1 (MQ=255) aGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTtctc < 1:322390/149‑1 (MQ=255) ggCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTtctc > 6:165731/1‑148 (MQ=255) gcgcGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGa < 6:47763/149‑1 (MQ=255) gcgAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGccc < 8:138673/89‑1 (MQ=255) gcgAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGAc > 7:149060/1‑148 (MQ=255) ctgctgGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCACCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGAt > 8:232351/1‑118 (MQ=255) ctgctgGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCACCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGAt < 7:232351/118‑1 (MQ=255) tgctgGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGt > 5:359735/1‑149 (MQ=255) ctgGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGt < 4:13625/147‑1 (MQ=255) ctgGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTgg < 7:18340/149‑1 (MQ=255) ctgGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTgg > 3:133644/1‑149 (MQ=255) aGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTc > 4:237865/1‑147 (MQ=255) aGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGa < 1:40546/149‑1 (MQ=255) gCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAg > 7:206168/1‑149 (MQ=255) gggCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCt < 3:152996/149‑1 (MQ=255) ggCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTg < 6:320380/149‑1 (MQ=255) cgcgGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGtt > 8:247315/1‑149 (MQ=255) gcgGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTtc > 6:3372/1‑149 (MQ=255) cgGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTtct < 3:237865/149‑1 (MQ=255) ggTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTtctc < 6:359735/149‑1 (MQ=255) gTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCg < 8:149060/149‑1 (MQ=255) tCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGa < 5:165731/149‑1 (MQ=255) cTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGAc < 8:191881/148‑1 (MQ=255) cTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGAc < 4:218297/148‑1 (MQ=255) tGAACAAGTGACATCCCGAAAGCTTTGACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGccc > 1:193979/1‑149 (MQ=255) tGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGccc > 6:141300/1‑149 (MQ=255) aaGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAg > 1:102878/1‑147 (MQ=255) aaGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAg < 2:102878/147‑1 (MQ=255) aGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCAc < 5:334854/149‑1 (MQ=255) aTCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGTGACCCCAAGGTCAGATCAGTTCTTGCGAATTTtct > 1:368245/1‑100 (MQ=255) aTCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGTGACCCCAAGGTCAGATCAGTTCTTGCGAATTTtct < 2:368245/100‑1 (MQ=255) aTCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCAc > 8:222262/1‑149 (MQ=255) aTCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCAc > 2:164918/1‑149 (MQ=255) cccGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACgg > 7:11095/1‑149 (MQ=255) ccGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGt > 6:262517/1‑149 (MQ=255) cGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGgccg < 5:8959/54‑1 (MQ=255) cGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGgccg > 6:8959/1‑54 (MQ=255) cGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCtt > 7:122260/1‑85 (MQ=255) cGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCtt < 8:122260/85‑1 (MQ=255) gAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTgc > 2:218651/1‑149 (MQ=255) aGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCGTGAAGGTgctgg < 2:193979/149‑4 (MQ=255) aCCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGCGGGCCGCCGAAGCGCACCCAAGGTCAGATCAGTTCTGGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCCGCACCTGCACGGTGCCGCCCTAGcc > 8:347060/1‑149 (MQ=255) aCCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGcc > 7:114556/1‑149 (MQ=255) aCCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGcc < 8:11095/149‑1 (MQ=255) cTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACg > 3:198234/1‑133 (MQ=255) cTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACg < 4:198234/133‑1 (MQ=255) cTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCt > 1:249374/1‑149 (MQ=255) cctctgctGGGGCGGGTTTA‑CCCGCTGCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATAGCCGTGGTCGAGCTGTTATCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCtt > 2:30098/5‑149 (MQ=255) cttgctGGAGCGGGTAAC‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCCCGGTGCCGCCATAGCCCTTGa < 7:347060/149‑1 (MQ=255) cttgctGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCtt < 7:247315/147‑1 (MQ=255) cttgctGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACACCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGa > 8:120647/1‑149 (MQ=255) gctGGGGCGGGTTTA‑CCCGCTCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACg > 7:244532/1‑127 (MQ=255) gctGGGGCGGGTTTA‑CCCGCTCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACg < 8:244532/127‑1 (MQ=255) ctGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGa < 5:141300/148‑1 (MQ=255) tGGGGCGGGTTTA‑CCCGCTCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGata > 5:9865/1‑149 (MQ=255) gAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATc < 1:218651/149‑1 (MQ=255) gAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACACCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGatat < 7:120647/148‑1 (MQ=255) aGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCa < 5:262517/149‑1 (MQ=255) gttta‑CCCGCTCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATc > 5:180076/5‑143 (MQ=255) gttta‑CCCGCTCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATc < 6:180076/139‑1 (MQ=255) a‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATc < 5:103181/139‑1 (MQ=255) a‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATc > 6:103181/1‑139 (MQ=255) ccGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGCACCcaccac < 5:3372/149‑1 (MQ=255) ccGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGCACCcaccac < 8:206168/149‑1 (MQ=255) ccGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGCACCcaccac < 7:222262/149‑1 (MQ=255) ccGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGCACCcaccac > 6:157242/1‑149 (MQ=255) | TGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAA‑CCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTGTTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGCACCCACCAC > NC_002947/5613921‑5614207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |