| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,748,124 | T→A | 5.4% | intergenic (‑151/+35) | PP_5043 ← / ← typA | PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,748,124 | 0 | T | A | 5.4% | 294.7 / 5.0 | 92 | intergenic (‑151/+35) | PP_5043/typA | PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase |
| Reads supporting (aligned to +/- strand): ref base T (39/48); new base A (3/2); total (42/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.97e-01 | |||||||||||
CCAAGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGAAT > NC_002947/5747977‑5748270 | ccAAGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTc > 7:124520/1‑149 (MQ=255) cAAGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTc > 6:20977/1‑148 (MQ=255) aaGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTATCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGa > 1:77373/1‑149 (MQ=255) tcaaaaGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGATCATTCCACAAGGCACACAAAAACGCCCCCGCCCGTTCGAcctg > 2:370861/4‑147 (MQ=255) tCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgg > 3:226288/1‑149 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAATAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggg < 2:3200/148‑1 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgggg < 3:278060/149‑1 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgggg < 2:291984/149‑1 (MQ=255) cAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgggg > 2:248830/1‑149 (MQ=255) aaaGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCggggg < 1:203976/149‑1 (MQ=255) cAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTTCAAAACACAGTCGCTTGCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGtt < 3:191486/149‑1 (MQ=255) cAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGTCGAAAGGCCGGGGGCGtt < 4:352818/149‑1 (MQ=255) agagCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGtttt < 8:124520/149‑1 (MQ=255) gagCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttc < 2:40899/149‑1 (MQ=255) agccagccAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttca < 2:364554/149‑1 (MQ=255) agccaACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgg > 3:212456/1‑134 (MQ=255) agccaACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgg < 4:212456/134‑1 (MQ=255) agccaACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTttcattca < 3:187400/149‑1 (MQ=255) caACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGcc < 7:101784/149‑1 (MQ=255) ccTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCt > 4:284102/1‑147 (MQ=255) cTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAg > 5:321919/1‑149 (MQ=255) agaaCGGCTTCTGATTGTCACAACGCTCCTCGGTTTCCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGc < 7:92493/144‑1 (MQ=255) aCGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACt > 7:127686/1‑149 (MQ=255) ggCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACt > 4:86686/1‑147 (MQ=255) ggCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCa < 3:368190/149‑1 (MQ=255) gCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAg < 4:226288/149‑1 (MQ=255) ttCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGt > 8:186027/1‑148 (MQ=255) cTGATTGTCACAAGGCTCCTCGTTTTGCAGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGTCACACAAAAACGCCCCAGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGtt < 3:276936/147‑1 (MQ=255) cTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttct > 2:60309/1‑149 (MQ=255) cTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGtt < 4:299076/147‑1 (MQ=255) aTTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttgg > 3:78097/1‑149 (MQ=255) aTTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttctt < 7:276938/147‑1 (MQ=255) aTTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttctt < 7:37996/147‑1 (MQ=255) gTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTGAGttagctcag < 5:66544/148‑8 (MQ=255) tCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggcttt > 7:66667/1‑149 (MQ=255) acaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttct > 8:38942/1‑149 (MQ=255) acaAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttct > 7:59196/1‑149 (MQ=255) caAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttctt < 4:78097/149‑1 (MQ=255) aaGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttcttg > 7:142784/1‑149 (MQ=255) tcGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGcgcg > 1:191159/1‑149 (MQ=255) ggTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGcgcg < 2:28930/147‑1 (MQ=255) ggTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCggg < 7:186027/149‑1 (MQ=255) ggTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCgg < 8:127686/148‑1 (MQ=255) ggTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCgg < 5:20977/148‑1 (MQ=255) tttGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttcttgg < 7:45045/138‑1 (MQ=255) tttGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGttcttggctttcttgg > 8:45045/1‑138 (MQ=255) ttGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTAc < 7:38942/149‑1 (MQ=255) gCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACg > 4:14095/1‑148 (MQ=255) cGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTc > 8:46302/1‑149 (MQ=255) tCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGTCGAAAGGCCGGGGGCGtttt > 3:268945/1‑93 (MQ=25) tCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGTCGAAAGGCCGGGGGCGtttt < 4:268945/93‑1 (MQ=25) aCAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCgg < 4:270284/135‑1 (MQ=255) aCAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCgg > 3:270284/1‑135 (MQ=255) aCAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTc < 7:46302/149‑1 (MQ=255) gCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTc > 3:41389/1‑148 (MQ=255) aCCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAg < 8:142784/149‑1 (MQ=255) aCCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACC‑GGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAg > 4:158568/1‑148 (MQ=255) ccTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgggg > 5:158051/1‑75 (MQ=255) ccTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCgggg < 6:158051/75‑1 (MQ=255) ccTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAgg < 2:77373/149‑1 (MQ=255) ccTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAgg < 2:191159/149‑1 (MQ=255) tGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGa > 2:144039/1‑92 (MQ=255) tGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGa < 1:144039/92‑1 (MQ=255) aaaCACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGAtcttc < 1:370861/149‑1 (MQ=255) acaGTCGCTTCCTACTGGAGCTTTCCAGAAGGCTCACAAAAAGGCCCGCGGCCTTTCGTCCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTc < 8:160017/126‑1 (MQ=255) aGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTgcgc < 1:248830/149‑1 (MQ=255) gTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCa < 8:59196/149‑1 (MQ=255) cTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACGCCTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGAt < 1:60309/149‑1 (MQ=255) tACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATc > 6:318596/1‑148 (MQ=255) tGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACt > 8:158746/1‑149 (MQ=255) gAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTa < 6:321919/149‑1 (MQ=255) aGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAg < 8:66667/149‑1 (MQ=255) aGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACCCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAg < 3:270526/149‑1 (MQ=255) gCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAg > 5:221404/1‑148 (MQ=255) tttCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAg > 2:42539/1‑149 (MQ=255) tCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACC‑GGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTc < 3:158568/148‑1 (MQ=255) cacaAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTa < 2:238174/141‑1 (MQ=255) cacaAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTa > 1:238174/1‑141 (MQ=255) caAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCaa > 6:8204/1‑110 (MQ=255) caAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCaa < 5:8204/111‑2 (MQ=255) caAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTAAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTCGCGCAGACGGATCGACTTAGGAGTCACtt > 6:241380/1‑149 (MQ=255) aaGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTc < 3:284102/149‑1 (MQ=255) gCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCGGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCAAGGATCTTCTGGCGCAGACGGATAGACTTAGGAGTCACTTCGc > 8:342371/1‑148 (MQ=255) gCACACAAAAACGCCCCCGGCCTTTCGACAGGGGGCGTTTTCATTCAGCCTGAGCTAACTACTTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCAAGGATCTTCTTGCGCAGACGGATCGACTGAGGATGCACTTCGc > 8:337534/1‑148 (MQ=255) cacaAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAg > 5:105039/1‑149 (MQ=255) tgaaaaCGCCCCCGGTCGAAAGGCCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCt > 6:373346/3‑149 (MQ=39) aaaaCGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCtcg < 3:14095/149‑1 (MQ=255) aaaaCGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCtcg < 4:41389/149‑1 (MQ=255) aaCGCCCCCGGTCGAAAGGCCCGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCtcgtc > 6:370990/1‑149 (MQ=255) gccccGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCtcgtc > 5:132250/2‑145 (MQ=255) gccccGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCtcgtc < 6:132250/144‑1 (MQ=255) ccccGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTATTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCt > 2:294127/1‑149 (MQ=255) tttCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGAAt > 2:366524/1‑149 (MQ=255) | CCAAGCTCCAAAGCAAGAGCCAGCCAACCTAAGCACGGCTTCTGATTGTCACAAGGCTCCTCGGTTTGCCGTCGAACAAGCACCTGCAAAACACAGTCGCTTCCTACTGGAGCTTTCCACAAGGCACACAAAAACGCCCCCGGCCTTTCGACCGGGGGCGTTTTCATTCAGCCTGAGCTAACTCAGTTCTTGGCTTTCTTGGCTGCGCGGGTACG‑CTCGCCTTCGTCCAGGATCTTCTTGCGCAGACGGATCGACTTAGGAGTCACTTCGCACAGCTCGTCGTCCTGGATGAAT > NC_002947/5747977‑5748270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |