Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,802,327 | C→G | 11.9% | Q169H (CAG→CAC) | pilQ ← | type IV pili biogenesis protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,802,327 | 0 | C | G | 11.9% | 145.0 / 7.9 | 50 | Q169H (CAG→CAC) | pilQ | type IV pili biogenesis protein |
Reads supporting (aligned to +/- strand): ref base C (19/25); new base G (3/3); total (22/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCCAGCAGCAACTGCGCCAGATCGGCGGCCTTGGC > NC_002947/5802186‑5802467 | cTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCa > 2:264977/1‑149 (MQ=255) ccTTGCCGGGCAGCAGTTTCTCGCCGTACAGCGGCACACCACAGCGTACCACCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATAGCTACCTTGCGCACCGGCAAATCCAACTGCGCCACCAGCTGGAGCAta > 1:259042/1‑148 (MQ=255) cTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCAGCTGGTGGCGCagtt < 7:215253/149‑4 (MQ=255) cGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCAGCTGGTGGCGCagttg > 2:182716/1‑141 (MQ=255) cGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCAGCTGGTGGCGCagttg < 1:182716/145‑5 (MQ=255) ggCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAg < 4:346897/149‑1 (MQ=255) tctcGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGc < 3:316563/148‑1 (MQ=255) tccGTACAGCGGCCCACCCCAGCGTACCCACAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTTCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCggg < 5:345808/146‑1 (MQ=255) gCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCggg < 3:118113/147‑1 (MQ=255) gCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGc < 8:229947/148‑1 (MQ=255) gCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCa < 4:79327/149‑1 (MQ=255) gCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCa < 1:203554/149‑1 (MQ=255) cAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGca > 7:354494/1‑149 (MQ=255) cACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAAc < 7:145772/149‑1 (MQ=255) cACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAAc < 1:264977/149‑1 (MQ=255) cccAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACgtg > 4:359498/1‑149 (MQ=255) aGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTg < 8:354494/149‑1 (MQ=255) ccccAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCAtctc > 1:162910/1‑102 (MQ=255) ccccAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCAtctc < 2:162910/102‑1 (MQ=255) cccAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCAGCTGGTGGCGCagtt < 2:353952/100‑4 (MQ=255) cccAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCAGCTGGTGGCGCagtt > 1:353952/1‑97 (MQ=255) ccAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCg > 1:326225/1‑101 (MQ=255) ccAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCg < 2:326225/101‑1 (MQ=255) cAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAATGTGTTGGTGCGCTCAt < 3:83512/149‑1 (MQ=255) aGGCTTTTCTCATAATCGCCGGTGGCCTCGACGATACTCGCCGCGTTCTCTACCTTGCTCACCGTCACATCCAACTGCGCCACCAGCTGGCGCATCTCGTCCAGGCGGTCAGAGGGCAGATGCACCAACAACGTGGTGTTGCGCTCATc < 2:259042/149‑1 (MQ=255) ttCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGaca < 3:359498/147‑1 (MQ=255) ctcATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTc > 2:142088/1‑148 (MQ=255) aTAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAAGTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTTGTGCGCTCATCGAAACTCa < 4:243476/146‑1 (MQ=255) aaTCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGc > 5:26063/1‑147 (MQ=255) tCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGTGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCaa < 5:190172/143‑1 (MQ=255) tCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGc > 7:226784/1‑149 (MQ=255) tCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACAATCaa > 6:190172/1‑143 (MQ=255) ccTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATg > 1:275874/1‑149 (MQ=255) cTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTa < 2:208669/136‑1 (MQ=255) tCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAggg > 5:106765/1‑144 (MQ=255) tCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAggg < 6:106765/144‑1 (MQ=255) aTACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGTATGCCGTCAcc < 1:142088/149‑1 (MQ=255) gcCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAg > 6:102747/1‑149 (MQ=255) cTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGc > 1:46687/1‑149 (MQ=255) aTCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGc > 3:83502/1‑149 (MQ=255) tGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCcagca < 2:179774/145‑1 (MQ=255) tGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCcagca > 1:179774/1‑145 (MQ=255) gcACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCCAGCAGCAACTgc < 2:46687/149‑1 (MQ=255) cACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCCAGCAGCAACTgcg > 7:141947/1‑149 (MQ=255) aaCTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCCAGCAGCAACTGCGCCAGATCggcggc > 3:69469/1‑149 (MQ=255) tGCGCCAGCTGGTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCCAGCAGCAACTGCGCCAGATCGGCGGCCtt > 5:15968/1‑149 (MQ=255) gcCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCCAGCAGCAACTGCGCCAGATCGGCGGCCTTGGc < 3:157319/149‑1 (MQ=255) gcCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCCAGCAGCAACTGCGCCAGATCGGCGGCCTTGGc < 8:141947/149‑1 (MQ=255) accaGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCCAGCAGCAACTGCGCCAGATcggcg < 2:201330/138‑1 (MQ=255) accaGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCCAGCAGCAACTGCGCCAGATcggcg > 1:201330/1‑138 (MQ=255) | CTCCTTGCCGGGCCGCAGTTTCTCGCCGTACAGCGGCCCACCCCAGCGTACCCCCAGGCTTTTCTCATAATCGACGTTGGCCTCGACGATACGCGCCTCGATCGCTACCTGGCGCACCGGCACATCCAACTGCGCCACCAGCTGGCGCATCTCGGCCAGGCGGTCAGCGGGCAGATGCACCACCAACGTGTTGGTGCGCTCATCGACACTCAAGCTAGCCGGAGGGATGCCGTCACCCTCCAGGCCTGCCAGCAGCAACTGCGCCAGATCGGCGGCCTTGGC > NC_002947/5802186‑5802467 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |