Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,868,472 | C→G | 7.3% | G31A (GGC→GCC) | lgt ← | prolipoprotein diacylglyceryl transferase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,868,472 | 0 | C | G | 7.3% | 176.7 / 4.7 | 55 | G31A (GGC→GCC) | lgt | prolipoprotein diacylglyceryl transferase |
Reads supporting (aligned to +/- strand): ref base C (24/27); new base G (2/2); total (26/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.18e-01 |
TGCAGGTCGTAGAACAGCACATAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCAAAAAGCTGAGGCCAACACAGAACAA > NC_002947/5868328‑5868612 | tGCAGGTCGTAGAACAGCACATAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCgccgat < 5:89393/149‑1 (MQ=255) cAGGTCGTAGAACAGCACATAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCgccgatgc < 5:255456/149‑1 (MQ=255) cGTAGAACAGCACATAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATc < 7:185932/149‑1 (MQ=255) gTAGAACAGCACATAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTCCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCgccgatgccgat > 3:100153/1‑147 (MQ=255) tAGAACAGCACATAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAg > 5:240001/1‑149 (MQ=255) gAACAGCACATAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACCCCCGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGt < 5:126613/149‑1 (MQ=255) gAACAGCACATAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAgg > 2:240861/1‑148 (MQ=255) cacaTAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACAt > 1:163800/1‑147 (MQ=255) cacaTAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACAt > 1:169488/1‑147 (MQ=255) aTAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGc < 2:13816/149‑1 (MQ=255) ccgccgACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGAt > 7:97537/1‑149 (MQ=255) ccgACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGAtttt < 5:68027/149‑1 (MQ=255) attCACCTCGATCGCCAGCCAGACCCGGAGGTCGGACAGCTTCGCTCGGTTGCAGGTGGGGTCGAAGGGTTTGAGCCGGCGTGAGGCCAGCTGCCAGGGACCGCCGATGCGGATCAGGTACATCATGCCGTACCAATGGATTTTCAggg < 4:219668/147‑3 (MQ=255) tCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGc > 7:47023/1‑149 (MQ=255) cACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTCCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGcc < 4:100153/149‑1 (MQ=255) cccccATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCg < 1:122351/149‑1 (MQ=255) ccATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATg < 1:240861/149‑1 (MQ=255) aCAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAg > 4:15608/1‑149 (MQ=255) aGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAg > 5:251103/1‑147 (MQ=255) aGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAg < 6:251103/147‑1 (MQ=255) cacCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGt < 8:97537/149‑1 (MQ=255) cacCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGt < 3:15608/149‑1 (MQ=255) acCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTc < 2:36151/149‑1 (MQ=255) ccAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCTTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCt < 5:153428/149‑1 (MQ=255) cAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACg > 1:17296/1‑142 (MQ=255) cAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACg < 2:17296/142‑1 (MQ=255) cAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTa > 5:332297/1‑149 (MQ=255) aGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTAt < 6:240001/149‑1 (MQ=255) ggACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGc < 8:47023/148‑1 (MQ=255) ggACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCg > 4:293140/1‑149 (MQ=255) cAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCggg > 1:114178/1‑148 (MQ=255) ttCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAgg > 2:262505/1‑149 (MQ=255) ctcGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAgg < 3:293140/147‑1 (MQ=255) ctcGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGgc < 3:339466/148‑1 (MQ=255) tcGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATg > 8:320872/1‑95 (MQ=255) tcGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATg < 7:320872/95‑1 (MQ=255) ccAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAAc > 3:258044/1‑149 (MQ=255) gAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTc > 2:250087/1‑140 (MQ=255) gAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTc < 1:250087/140‑1 (MQ=255) aaGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAg < 3:151886/99‑1 (MQ=255) aaGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAg > 4:151886/1‑99 (MQ=255) aGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATtcaaatcaaa > 5:127425/1‑148 (MQ=255) gCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATg > 6:110069/1‑83 (MQ=255) gCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATg < 5:110069/83‑1 (MQ=255) gCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCaaaaa < 2:163800/149‑1 (MQ=255) gCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCaaaaa < 2:169488/149‑1 (MQ=255) ccGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCAAAAAg > 4:282901/1‑149 (MQ=255) gAGGCCAGCAGCCAGGCACCGCCGATGCCGTTCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCAAAAAGCTGAGGc > 1:33265/1‑149 (MQ=255) ggCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCAAAAAGCTGAGGCCa < 4:258044/149‑1 (MQ=255) gCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCAAAAAGCTGa < 3:295098/143‑1 (MQ=255) gCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCAAAAAGCTGa > 4:295098/1‑143 (MQ=255) cagcCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCAAAAAGCTGAGGCCAACACAg < 2:114178/149‑1 (MQ=255) gatcggCATCGGCGGTGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGa > 6:67610/5‑106 (MQ=255) gatcggCATCGGCGGTGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGa < 7:116694/102‑1 (MQ=255) gatcggCATCGGCGGTGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGa < 5:67610/102‑1 (MQ=255) gatcggCATCGGCGGTGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGa > 8:116694/5‑106 (MQ=255) ccAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCAAAAAGCTGAGGCCAACACAGaa > 3:220025/1‑148 (MQ=255) aGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGACCTTCCTCTCGATTCAAATCAAAAAGCTGAGGCCAACACAGaacaa > 8:328047/1‑149 (MQ=255) | TGCAGGTCGTAGAACAGCACATAGCCCAGGCGCCCGCCGACAATCACCCCCATCGACAGCCAGAACACCAGGTCGGACAGCTTCTCGCGGTTCCAGGTGGGGTCGAAGCGGTTCAGCCGGCGTGAGGCCAGCAGCCAGGCACCGCCGATGCCGATCAGGTACATCAGGCCGTACCAATGGATTTTCAGCGGCCCGATGGCCAAGGCCACGGGGTCTATCTGCGGGTAAGGCAGCATGGAACTTCCTCTCGATTCAAATCAAAAAGCTGAGGCCAACACAGAACAA > NC_002947/5868328‑5868612 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |