Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,897,942 | G→C | 9.6% | A982A (GCC→GCG) | PP_5173 ← | RND family transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,897,942 | 0 | G | C | 9.6% | 156.5 / 8.0 | 52 | A982A (GCC→GCG) | PP_5173 | RND family transporter |
Reads supporting (aligned to +/- strand): ref base G (26/21); new base C (3/2); total (29/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.03e-01 |
CGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGACAAGCCCTGGGCTTCGAACTCGTC > NC_002947/5897795‑5898088 | cgcgGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAg < 6:22032/148‑1 (MQ=255) tAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATgg < 5:345322/149‑1 (MQ=255) cccGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTTTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCCTACGCCATgattg < 8:177117/148‑5 (MQ=255) cccGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGCACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCCTACGCCATgattgg > 7:177117/1‑144 (MQ=255) cccGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGTAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGcc > 8:211733/1‑149 (MQ=255) cccGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGcc < 2:334974/149‑1 (MQ=255) cTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGaa < 2:129756/148‑1 (MQ=255) aGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTc < 3:41319/149‑1 (MQ=255) gggCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTcgc < 6:360553/149‑1 (MQ=255) ccATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGGGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTg > 7:184105/1‑149 (MQ=255) tatGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGTAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCaa < 7:211733/149‑1 (MQ=255) atGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGccc > 3:292126/1‑129 (MQ=255) atGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGccc < 4:292126/129‑1 (MQ=255) cTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGAt > 1:47705/1‑149 (MQ=255) aGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCAt < 8:122458/148‑1 (MQ=255) gCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTcgcc > 8:353739/1‑149 (MQ=255) tCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGc > 5:355764/1‑133 (MQ=255) tCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGc < 6:355764/133‑1 (MQ=255) cTTGTACCAGGCCACGTACAGTGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTca > 4:358411/1‑149 (MQ=255) cTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGt > 1:293054/1‑147 (MQ=255) gTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTcagc < 8:184105/148‑1 (MQ=255) aCCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTcagcag > 7:139080/1‑148 (MQ=255) ccAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGa > 5:150264/1‑149 (MQ=255) cAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGAt > 1:75537/1‑149 (MQ=255) ccACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATcggc < 7:353739/149‑1 (MQ=255) cACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAgg < 6:87929/71‑1 (MQ=255) cACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAgg > 5:87929/1‑71 (MQ=255) cACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATgg < 3:121058/77‑1 (MQ=255) cACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATgg > 4:121058/1‑77 (MQ=255) aCAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGt > 3:292229/1‑149 (MQ=255) aGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACCCCTCGCGTGCAATCGGGATCATGCCCAGGCACGCCGCCGCCGCCGTCAGCAGGATCGGCCGGCGTCg > 3:162405/1‑149 (MQ=255) aGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCg > 5:78455/1‑149 (MQ=255) tgcCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCggt < 3:358411/148‑1 (MQ=255) tggAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGtggttggt > 6:31584/2‑149 (MQ=255) aGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGtggttggt > 5:324993/1‑149 (MQ=255) gcagcGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTc > 8:113902/1‑148 (MQ=255) gcGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCCTACGCCATgat < 8:179285/52‑3 (MQ=255) gcGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCCTACGCCATgat > 7:179285/1‑50 (MQ=255) tCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCaccacc > 8:137257/1‑149 (MQ=255) gCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGc > 3:297407/1‑148 (MQ=255) aGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTc < 4:127133/136‑1 (MQ=255) aGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTc > 3:127133/1‑136 (MQ=255) tCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCAc < 2:293054/149‑1 (MQ=255) cGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACg > 7:179899/1‑149 (MQ=255) aCGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGa < 2:47705/149‑1 (MQ=255) atCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGACAAGcc < 6:324993/149‑1 (MQ=255) cGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATcggcc > 5:349785/1‑96 (MQ=255) cGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATcggcc < 6:349785/96‑1 (MQ=255) aTCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGACAAGCCCTGGGCTTc < 5:31584/149‑1 (MQ=255) tCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGACAAGCCCTGGGCTTCg < 7:113902/149‑1 (MQ=255) aTGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGACAAGCCCTGGGCTTCGaa > 2:18832/1‑149 (MQ=255) aTGGCCTACGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGACAAGCCCTGGGCTTCGaa > 5:61055/1‑149 (MQ=255) ggCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGACAAGCCCTGGGCTTCGAACt > 7:245634/1‑149 (MQ=255) gCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCT‑‑‑CGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGACAAGCCCTGGGCTTCGAACTCGTc > 4:311244/1‑149 (MQ=255) tAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGACAAGCCCTGGGCTTCGAACTCGTc < 8:139080/149‑1 (MQ=255) | CGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTCGCGTGCAATCGGGATCATGCCCAGGCTCGCCGCCGCCGCGGTCAGCAGGATCGGCCGGCGTCGGTGGTTGGTGGCCTCCACCACCGCATCCCACGGCGACAAGCCCTGGGCTTCGAACTCGTC > NC_002947/5897795‑5898088 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |