Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,011,489 | T→G | 9.3% | I114S (ATC→AGC) | rep → | single‑stranded DNA dependent ATPase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,011,489 | 0 | T | G | 9.3% | 154.9 / 8.3 | 54 | I114S (ATC→AGC) | rep | single‑stranded DNA dependent ATPase |
Reads supporting (aligned to +/- strand): ref base T (25/24); new base G (2/3); total (27/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.33e-01 |
GGTCGCCACCTTGCTGCGCCCGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGAAAAGGCGCGCAACCCGCGCGAGCAGAC > NC_002947/6011349‑6011636 | ggTCGCCACCTTGCTGCGCCCGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGt < 5:62506/149‑1 (MQ=255) tCGCCACCTTGCTGCGCCCGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTg < 4:279796/149‑1 (MQ=255) ccACCTTGCTGCGCCCGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTg > 7:170336/1‑149 (MQ=255) aCCTTGCTGCGCCCGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTc < 3:347147/149‑1 (MQ=255) gctgcGCCCGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTGGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGAca > 5:320856/1‑149 (MQ=255) gctgcGCCCGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACAGCAACGCCTTGATGTCGGa < 3:195514/147‑1 (MQ=255) gctgcGCCCGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACAGCAACGCCTTGATGTCGGAc < 1:123016/148‑1 (MQ=255) tgcGCCCGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGAcat > 3:257896/1‑148 (MQ=255) cccGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATg > 5:291844/1‑148 (MQ=255) gAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAgg > 1:192453/1‑148 (MQ=255) aaGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGaa < 6:6517/149‑1 (MQ=255) gCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCgg < 2:192453/148‑1 (MQ=255) gCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGc < 3:345753/149‑1 (MQ=255) cGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGacgacg < 8:170336/149‑1 (MQ=255) gtgtACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATg > 3:290108/1‑121 (MQ=255) gtgtACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATg < 4:290108/121‑1 (MQ=255) gtgtACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACAGCAACGCCTTg < 2:124920/106‑1 (MQ=255) gtgtACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACAGCAACGCCTTg > 1:124920/1‑106 (MQ=255) ggtCCACAACCTGGGCCTGAACATCATCCGCAAGCAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAgg < 5:230411/120‑1 (MQ=255) gTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAgg > 6:230411/1‑122 (MQ=255) tCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCAACGACGGCATcgac > 7:273129/1‑146 (MQ=255) cacaACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATcgac > 6:233067/1‑144 (MQ=255) acaACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATATGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAg < 8:175118/116‑1 (MQ=255) acaACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATATGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAg > 7:175118/1‑116 (MQ=255) aaCCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACgaga > 1:121720/1‑145 (MQ=255) aaCCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACgaga < 2:121720/145‑1 (MQ=255) cTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGAt > 8:288622/1‑149 (MQ=255) aaCATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGATGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGaa > 4:270844/1‑105 (MQ=255) aaCATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGATGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGaa < 3:270844/105‑1 (MQ=255) cAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGgaag > 3:366496/1‑148 (MQ=255) cAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGgaag > 3:323748/1‑148 (MQ=255) aaCACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGAc < 6:320856/149‑1 (MQ=255) acacGCGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAGTACTCCGGCGACGACGGCATCGACGAGATGCAGGACAGGATCGGTGCCTGgaaggccgccc > 6:380362/1‑142 (MQ=255) acGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCTACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTg < 8:273129/149‑1 (MQ=255) aGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTc < 7:288622/149‑1 (MQ=255) gcgcCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTcc > 7:6823/1‑149 (MQ=255) cGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTg < 4:366496/149‑1 (MQ=255) gggTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAg < 4:31349/140‑1 (MQ=255) gggTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAg > 3:31349/1‑140 (MQ=255) tctcGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGaaaa < 4:257896/148‑1 (MQ=255) ctcGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGAAAAgg > 7:278279/1‑149 (MQ=255) tcGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGAAAAGgc > 2:240978/1‑149 (MQ=255) tcGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGAAAAGgc > 1:53728/1‑149 (MQ=255) gATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGc < 6:279938/102‑1 (MQ=255) gATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGc > 5:279938/1‑102 (MQ=255) gATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGAAAAGgc < 8:6823/147‑1 (MQ=255) cgacgaGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGAAAAGgcgc < 4:323748/143‑1 (MQ=255) gTCCGACAGCAACGCCTTGATGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGAAAAGGCGCGCAACCcgcgcg > 2:283368/1‑149 (MQ=255) tCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATc < 6:143412/84‑1 (MQ=255) tCCGACATCAAGGCGTAGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATc > 5:143412/1‑84 (MQ=255) cGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGAAAAGGCGCGCAACCCGCGCGAg < 8:278279/148‑1 (MQ=255) gACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATcgac < 8:151922/63‑1 (MQ=255) gACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATcgac > 7:151922/1‑63 (MQ=255) aTCAAGGCGTTGCTGTCGGACATCATGGAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGAAAAGGCGCGCAACCCGCGCGAGCAGAc > 8:224005/1‑149 (MQ=255) | GGTCGCCACCTTGCTGCGCCCGGGGGAAGGCCGTGGCCTGACCGTGTGTACGTTCCACAACCTGGGCCTGAACATCATCCGCAAGGAACACGAGCGCCTGGGCTATAAGCCGGGTTTCTCGATCTTCGACGAGTCCGACATCAAGGCGTTGCTGTCGGACATCATGCAGAAGGAATACTCCGGCGACGACGGCATCGACGAGATCAAGAACATGATCGGTGCCTGGAAGAACGACCTGGTCCTGCCGCCAGAAGCCCTGGAAAAGGCGCGCAACCCGCGCGAGCAGAC > NC_002947/6011349‑6011636 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |