Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,025,587 | G→A | 7.1% | T153T (ACG→ACA) | PP_5276 → | phospholipase D family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,025,587 | 0 | G | A | 7.1% | 161.8 / 2.5 | 56 | T153T (ACG→ACA) | PP_5276 | phospholipase D family protein |
Reads supporting (aligned to +/- strand): ref base G (27/25); new base A (2/2); total (29/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.29e-01 |
CTGCCGACCGTGGCGTGCGCGTGCGCATCCTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGATGCCGAGCCCAACCTCAACTTCA > NC_002947/6025439‑6025732 | cTGCCGACCGTGGCGTGCGCGTGCGCATCCTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTAcg > 2:216561/1‑149 (MQ=255) ccGACCGTGGCGTGCGCGTGCGCATCCTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTAcgc < 4:297798/147‑1 (MQ=255) ccGACCGTGGCGTGCGCGTGCGCATCCTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTAcgc < 5:106915/147‑1 (MQ=255) aCCGTGGCGTGCGCGTGCGCATCCTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGcc < 8:243851/149‑1 (MQ=255) aCCGTGGCGTGCGCGTGCGCATCCTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGcc > 1:331020/1‑149 (MQ=255) tgcgcgtgcgcATCCTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCgg < 2:331020/149‑1 (MQ=255) gcgcgtgcgcATCCTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGc < 7:50539/149‑1 (MQ=255) gcgtgcgcATCCTGCTCGACGACACCACCAGCGACGTCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTg < 4:209402/149‑1 (MQ=255) cgcATCCTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCaa < 4:120235/149‑1 (MQ=255) cTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTc > 5:210765/1‑149 (MQ=255) cTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTc < 1:176341/149‑1 (MQ=255) tGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTcg > 1:88852/1‑149 (MQ=255) gacACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCa > 8:38172/1‑149 (MQ=255) acacCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCt > 6:74340/1‑127 (MQ=255) acacCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCt < 5:74340/127‑1 (MQ=255) accaccAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCg > 3:237015/1‑149 (MQ=255) ccaccaGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCgg < 1:352276/149‑1 (MQ=255) ccaccaGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCgg > 8:149116/1‑149 (MQ=255) caccaGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGgc > 2:165428/1‑149 (MQ=255) caGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCa > 7:178334/1‑149 (MQ=255) cGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGc < 6:210765/149‑1 (MQ=255) gACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGTACCGGCGCATGca < 5:333103/149‑1 (MQ=255) gACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAg < 1:216561/147‑1 (MQ=255) gACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGc < 1:165428/148‑1 (MQ=255) cGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTcc > 5:28147/1‑149 (MQ=255) aTGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCtggt < 7:81008/149‑1 (MQ=255) ccTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGacaa > 4:34867/1‑147 (MQ=255) ccTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGacaa > 7:91400/1‑147 (MQ=255) tCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAg > 4:130642/1‑148 (MQ=255) tGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATgg < 6:28147/149‑1 (MQ=255) cATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCAt > 5:244092/1‑149 (MQ=255) cATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCAt > 7:32983/1‑149 (MQ=255) cGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCAtcgtc > 5:378836/1‑149 (MQ=255) aaCATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTcgg > 4:225354/1‑149 (MQ=255) aTCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTcggcgg > 7:76509/1‑149 (MQ=255) acaTTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCtggtg < 5:48674/119‑1 (MQ=255) acaTTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCtggtg > 6:48674/1‑119 (MQ=255) acaTTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCggcgggcg > 1:344499/1‑148 (MQ=255) tCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCGAcc > 8:57985/1‑149 (MQ=255) gcgTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACACGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTg > 5:213666/1‑149 (MQ=255) gcgTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACACGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTg > 5:208678/1‑149 (MQ=255) tgtTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGc < 4:237015/149‑1 (MQ=255) cAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGcgac < 3:130642/148‑1 (MQ=255) aaCCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGcgac > 2:115809/1‑147 (MQ=255) ccACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCt > 7:125380/1‑98 (MQ=255) ccACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCt < 8:125380/98‑1 (MQ=255) ccACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTa > 6:37061/1‑149 (MQ=255) cTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTAttt < 2:344499/149‑1 (MQ=255) tGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTc > 3:33928/1‑149 (MQ=255) aTCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGAt < 8:32983/149‑1 (MQ=255) aTCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGAt < 6:244092/149‑1 (MQ=255) gcgcAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGATGCCGAGc < 7:149116/149‑1 (MQ=255) gcAGTACCGGCGTTACACGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGATGCCGANccc < 6:213666/149‑1 (MQ=255) gcAGTACCGGCGTTACACGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGATGCCGAGccc < 6:208678/149‑1 (MQ=255) ccGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATTGCCATCGTCTGCGGGCGCAACCTGGGCGACGAGTATTTCGATGCCGAGCCCAACCTc < 6:378836/149‑1 (MQ=255) ccGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGATGCCGAGCCCAACCt > 1:244262/1‑148 (MQ=255) ccGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGATGCCGAGCCCAACCt > 8:89914/1‑148 (MQ=255) ggCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGATGCCGAGCCCAACCTCaa < 7:57985/149‑1 (MQ=255) aCGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGATGCCGAGCCCAACCTCAACTTCa < 8:91400/148‑1 (MQ=255) | CTGCCGACCGTGGCGTGCGCGTGCGCATCCTGCTCGACGACACCACCAGCGACGGCCTGGACACCGTCATGGGCACCCTCGATGCCCATCCGAACATCCACATTCGCGTGTTCAACCCACTGCATCTGGGGCGCAGTACCGGCGTTACGCGCGCCGTGGGCCGGCTGTTCAACTTGTCGCGCCAGCACCGGCGCATGCACAACAAGCTGTTCCTGGTGGACAACAGCATGGCCATCGTCGGCGGGCGCAACCTGGGCGACGAGTATTTCGATGCCGAGCCCAACCTCAACTTCA > NC_002947/6025439‑6025732 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |