Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,031,831 | A→T | 7.0% | K229* (AAG→TAG) ‡ | dppA‑IV → | dipeptide transport protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,031,831 | 0 | A | T | 7.0% | 153.1 / 2.9 | 57 | K229* (AAG→TAG) ‡ | dppA‑IV | dipeptide transport protein |
Reads supporting (aligned to +/- strand): ref base A (29/23); new base T (2/2); total (32/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.39e-01 |
TCCGCAGAATACGCTGACAAGCTGCTCAAGGCCGGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGCCGAAGCGGGCCAGGACGGTAACCTCAAGGTG > NC_002947/6031684‑6031977 | tCCGCAGAATACGCTGACAAGCTGCTCAAGGCCGGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCaa > 3:27628/1‑149 (MQ=255) aGAATACGCTGACAAGCTGCTCAAGGCCGGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCTTGCcgg > 7:107666/1‑149 (MQ=255) cGCTGACAAGCTGCTCAAGGCCGGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCTTGCcggc‑gaag < 5:6054/148‑4 (MQ=255) gCTGACAAGCTGCTCAAGGCCGGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCTTGCcggc‑gaagta < 8:107666/149‑6 (MQ=255) gCTGACAAGCTGCTCAAGGCCGGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTACGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGa > 7:182859/1‑149 (MQ=255) taCAAGATGCTCAAGGACATCACACCGAAAAAGCTCAACAACCAACCGATCGCCACCGTGCCGTTAGTGTTCC‑‑‑AGCTTTTCCAGAAAGACGCCATCGTCCGCTAACTCTCCAACCATTACTACTTCGACGCCAAGCAGCC‑GGACGAccc > 4:102401/2‑149 (MQ=255) aCAAGCTGCTCAAGGCCGGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCCAAAAGCGTTACAAAAAAAGCCCCGTGGTGCCCTACCCCGCCAACCCGGCAAAATTACCCGGCAACCCGGC‑GGtacac > 1:115030/1‑145 (MQ=255) ctgctCAAGGCCGGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGAt > 3:366086/1‑149 (MQ=255) ctCAAGGCCGGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCCGCAAGCCGGC‑GGTCGACCCGCTGATAtt > 3:203446/1‑149 (MQ=255) aaGGCCAGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGc < 7:89633/149‑1 (MQ=255) acacCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATcaccac > 7:212686/1‑149 (MQ=255) cGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCGTCACCACCGAt > 7:186235/1‑149 (MQ=255) ggAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATg > 5:275246/1‑149 (MQ=255) gAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGc < 3:85989/149‑1 (MQ=255) gCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTAGCCGGCAAGCCGGC‑GGTCGGCCCGCTGATCTTCGCCATCACCACCGATGCCCACg > 6:26322/1‑149 (MQ=255) cTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGt < 4:27628/149‑1 (MQ=255) caacaaCCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTgc > 8:14743/1‑149 (MQ=255) aacaacCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTc < 6:378260/123‑1 (MQ=255) aacaacCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACACGCTGATCTTc > 5:378260/1‑123 (MQ=255) aacaacCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCCGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTgcg > 5:215941/1‑149 (MQ=255) aacaacCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGACAACCCCGACTACATCGCCCGCAACCCCGC‑CCTCGACCCGCAGATCATCGCCCAAACCACCGAAGCCAACGTgcc > 4:270092/1‑148 (MQ=255) acaacCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTgcgc < 8:182859/149‑1 (MQ=255) aaccaaccGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCCAGCCCGC‑GGTCGCCCCGCTGATCTTCGCCATCAACACCGATGCCAACCTGCGCCt > 1:357398/1‑149 (MQ=255) accaacgCATCGGCACCGGGCCTTTCGTGTTCA‑‑‑TGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGG‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTg < 4:203446/149‑1 (MQ=255) caaccGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTg > 7:65212/1‑147 (MQ=255) caaccGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTg > 2:307281/1‑147 (MQ=255) aaccGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCCGCAAGACCGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATCCCAACGTGCGCCTg > 1:108024/1‑146 (MQ=255) ggCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCaa < 1:307281/149‑1 (MQ=255) aCCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTAGCCGGCAAGCCCGC‑GGGCGACCCGCGGATCTTCGCCCTCACCCCCGAAGCCCACGTGCGCCGGCAGCAGCTCaacct > 6:15992/1‑146 (MQ=255) ggCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTTGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGc < 3:270092/149‑1 (MQ=255) cGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAg > 1:297974/1‑149 (MQ=255) tgtTCC‑‑‑AGCGTTTCGAGAATGATGCCGTGGTGCTCTTCCGCGCAAACCCGGACTACTTCGCCGGCATTACGTT‑GGTCGACCATCTGATCTTCGCCATCACCACCGATGCCTACGTGCGCCTGCAGAAGCTGAAGCGTTGAGAGTGCCa < 2:108024/148‑1 (MQ=255) tCC‑‑‑AGCGTTCCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGtt > 4:333329/1‑149 (MQ=255) tttcatcGTTTTCATTAATACGCCGTGGTTCGGGTCCGCGCCAAACCGGTATAACTCGGCGGCAATGCGGCGGGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAg < 2:115030/142‑1 (MQ=255) aGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGcc < 5:309451/149‑1 (MQ=255) gCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGcc < 5:234368/148‑1 (MQ=255) gCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCCGACTACTTAGCCGGCAAGCCCGC‑GGTCGACCCGCTGATCTTAGCCATCACCACCCATGCCAACCTGCGCCAGCAGAAGCTAAACCGTGGCCAGTGCCAGGTTGccc > 6:234368/1‑149 (MQ=255) tCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTc < 3:102401/148‑1 (MQ=255) tCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTc < 8:65212/148‑1 (MQ=255) cAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGcc < 6:275246/149‑1 (MQ=255) aGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGcc > 3:292441/1‑148 (MQ=255) aaaGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCaa < 8:91155/149‑1 (MQ=255) gCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGtt < 6:215941/149‑1 (MQ=255) ccGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTg < 8:212686/149‑1 (MQ=255) ggtgCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGAt > 4:320024/1‑79 (MQ=255) ggtgCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGAt < 3:320024/79‑1 (MQ=255) gtgCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCGGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACAt > 7:122744/1‑149 (MQ=255) cgcTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGc < 3:333329/149‑1 (MQ=255) ccGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGCCGAAg > 5:369282/1‑149 (MQ=255) ccAACCCGGACTACTTCGCGGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGCCGAAGCGGGc < 2:357398/149‑1 (MQ=255) tactTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGCCGAAGCGGGCCAGGACGGTaa > 5:253528/1‑149 (MQ=255) ctTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGCCGAAGCGGGCCAGGACGGTAAc > 2:311039/1‑148 (MQ=255) tCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGcc > 2:285176/1‑98 (MQ=255) tCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGcc < 1:285176/98‑1 (MQ=255) ccGCCGGCTTGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGCCGAAGCGGGCCAGGACGGTAACCt > 2:1790/2‑148 (MQ=255) gCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGCCGAAGCGGGCCAGGACGGTAACCTCAAGGTg > 5:291141/1‑149 (MQ=255) gCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGCCGAAGCGGGCCAGGACGGTAACCTCAAGGTg < 4:366086/149‑1 (MQ=255) gCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGCCGAAGCGGGCCAGGACGGTAACCTCAAGGTg > 1:190265/1‑149 (MQ=255) | TCCGCAGAATACGCTGACAAGCTGCTCAAGGCCGGCACACCGGAAAAGCTCAACAACCAACCGATCGGCACCGGGCCGTTCGTGTTCC‑‑‑AGCGTTTCCAGAAAGACGCCGTGGTGCGCTACCGCGCCAACCCGGACTACTTCGCCGGCAAGCCGGC‑GGTCGACCCGCTGATCTTCGCCATCACCACCGATGCCAACGTGCGCCTGCAGAAGCTCAAGCGTGGCGAGTGCCAGGTTGCCCTGTCGCCCAAGCCGTTGGACATTGCCGAAGCGGGCCAGGACGGTAACCTCAAGGTG > NC_002947/6031684‑6031977 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |