Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,101,843 | A→T | 10.6% | E332V (GAA→GTA) ‡ | uvrD → | DNA‑dependent ATPase I/helicase II |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,101,843 | 0 | A | T | 10.6% | 134.6 / 6.8 | 54 | E332V (GAA→GTA) ‡ | uvrD | DNA‑dependent ATPase I/helicase II |
Reads supporting (aligned to +/- strand): ref base A (22/25); new base T (3/3); total (26/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
CTACCGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGCATCTATGG > NC_002947/6101703‑6101990 | cTACCGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACATAGCGCGCt > 6:105175/1‑149 (MQ=255) cTACCGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACATAGCGCGCt > 4:287363/1‑149 (MQ=255) aCCGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTAt > 8:268590/1‑149 (MQ=255) ccGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATg > 7:145156/1‑149 (MQ=255) gCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTc < 6:367844/149‑1 (MQ=255) aCCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTgg > 7:331981/1‑148 (MQ=255) aCCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTg < 2:346854/147‑1 (MQ=255) aCCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTg > 1:346854/1‑147 (MQ=255) aCCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGa < 7:268590/149‑1 (MQ=255) aCCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACATAGCGCGCTTCGTCGTgct < 3:287363/149‑3 (MQ=255) aCCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACATAGCGCGCTTCGTCGTgct < 5:105175/149‑3 (MQ=255) gcATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATc < 2:270731/149‑1 (MQ=255) aTCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCga < 8:331981/149‑1 (MQ=255) tCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATc > 5:152333/1‑146 (MQ=255) ggcggcCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTgg < 2:296292/149‑1 (MQ=255) cggcCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTc < 8:77716/149‑1 (MQ=255) ccAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATc > 3:46920/1‑134 (MQ=255) ccAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATc < 4:46920/134‑1 (MQ=255) cAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAg > 1:245242/1‑148 (MQ=255) aaCGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCt > 4:31017/1‑140 (MQ=255) aaCGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCt < 3:31017/140‑1 (MQ=255) cgcgCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAgg < 1:157099/149‑1 (MQ=255) gcgcTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAggg < 5:223383/149‑1 (MQ=255) gcgcTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAggg < 3:361041/149‑1 (MQ=255) gcgcTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAggg < 2:308652/149‑1 (MQ=255) gcTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGc > 7:30619/1‑148 (MQ=255) gCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATgcgcg > 2:218003/1‑149 (MQ=255) gCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATgcgcg > 1:20530/1‑149 (MQ=255) ccAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATgcgcg > 8:315438/1‑148 (MQ=255) caacaaCAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCTAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATgcgcgc > 1:267424/1‑148 (MQ=255) acaacaGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGAGGTAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAAc < 8:258691/149‑1 (MQ=255) caacaGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCga < 2:130702/117‑1 (MQ=255) caacaGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCga > 1:130702/1‑117 (MQ=255) cGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCg < 1:113372/149‑1 (MQ=255) ggCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTTAAGCAGGGCAATGCGCGCaa > 3:57502/1‑139 (MQ=255) ggCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTTAAGCAGGGCAATGCGCGCaa < 4:57502/139‑1 (MQ=255) gcgcCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCa < 8:9192/149‑1 (MQ=255) gcgcCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCa < 2:20530/149‑1 (MQ=255) ggCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTa < 8:145156/149‑1 (MQ=255) gCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCGATGTCGTGGAAACCATCGAGAGCCTGGTCACGCAGGGCAATGCGCGCCAAGAGATCGCCATACTGTAc > 8:346789/1‑149 (MQ=255) aGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGt < 8:30619/149‑1 (MQ=255) gACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGcc > 1:133398/1‑148 (MQ=255) cGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCg < 1:329310/122‑1 (MQ=255) cGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCg > 2:329310/1‑122 (MQ=255) aggcgaaCCACTCAGCCGGTACGCGGCCTACAACGAGCACGACGCAGCGCGCGAAGTCGTGGAACCCATCGAGAGCCAGCTCAAGCAGGGCAATGCGCGCACCGAGATCGCCAGCCTGGAGCCTTCCACCGCGCAGTCGCGCGTGCTg > 4:176756/1‑148 (MQ=255) ggcgaaCCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTTGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGa < 2:245242/149‑1 (MQ=255) gcgaaCCACTGCCCCTGTACGCGGCCGACAACGAGCACGACGAAGCGCGCGATGTCGTGGAACCCAGCGAGAGCCGGGTCAAGCAGGGCAGTGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTgg > 6:142817/1‑147 (MQ=255) cACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAggg < 7:119864/82‑1 (MQ=255) cACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAggg > 8:119864/1‑82 (MQ=255) cTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCct < 7:315438/149‑1 (MQ=255) ccTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTg > 6:293943/1‑130 (MQ=255) ccTGTACGCGGACTACAACGAGCACGACGAAGCTCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTg < 5:293943/130‑1 (MQ=255) gcgGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAgcg > 3:288317/1‑149 (MQ=255) cACGACATAGCGCGCTTCGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTCTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGCa > 3:213431/1‑148 (MQ=255) gacgaAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGcc < 2:293262/117‑1 (MQ=255) gacgaAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGcc > 1:293262/1‑117 (MQ=255) gacgaAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGc < 2:56108/144‑1 (MQ=255) gacgaAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGc > 1:56108/1‑144 (MQ=255) gacgaAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGCATCTa > 3:117187/1‑149 (MQ=255) gaAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCTTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGCATCTATgg < 7:346789/149‑1 (MQ=255) gaAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGCATCTATgg < 5:159500/149‑1 (MQ=255) | CTACCGCTCCACCGGCGGCATCCTCAAGGCGGCCAACGCGCTGATCGCCAACAACAGCGGGCGCCTGGGCAAGGAACTGTGGACCGACATGGGCGAAGGCGAACCACTGACCCTGTACGCGGCCTACAACGAGCACGACGAAGCGCGCTATGTCGTGGAAACCATCGAGAGCCTGGTCAAGCAGGGCAATGCGCGCAACGAGATCGCCATCCTGTACCGTTCCAACGCCCAGTCGCGCGTGCTGGAAGAGGCCCTGCTGCGCGAGCGCATCCCCTACCGCATCTATGG > NC_002947/6101703‑6101990 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |