Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 708,502 | G→T | 10.2% | E302* (GAG→TAG) ‡ | murJ → | lipid II flippase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 708,502 | 0 | G | T | 10.2% | 171.9 / 9.9 | 59 | E302* (GAG→TAG) ‡ | murJ | lipid II flippase |
Reads supporting (aligned to +/- strand): ref base G (27/26); new base T (4/2); total (31/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.73e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.73e-01 |
CGCTTCCTTCCTGGTGGCCGGCTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAGCGCGTTTGATGCGGCGATGACCCA > NC_002947/708357‑708650 | cGCTTCCTTCCTGGTGGCCGGCTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCgagga < 7:185954/147‑1 (MQ=255) ttcctGGTGGCCGGCTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTcgc > 6:182589/1‑148 (MQ=255) ttcctGGTGGCCGGCTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTcgc > 3:119322/1‑148 (MQ=255) ctGGTGGCCGGCTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAAt > 8:174590/1‑149 (MQ=255) gtggCCGGCTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAAtt < 2:247456/147‑1 (MQ=255) ccGGCTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGAc > 7:41350/1‑149 (MQ=255) cGGCTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGCC‑GTTGCCCTGGGCAAAATCCTCCTGCCGAACCTGGCCAACACCTACGCAAACAAGGACCACGAGGCGAACACGCGAAATCACGACt > 8:345566/1‑149 (MQ=255) gCTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTgg < 7:174590/149‑1 (MQ=255) cTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTggg < 4:348537/149‑1 (MQ=255) gTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCAcc > 6:225788/1‑149 (MQ=255) gATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCtgt < 5:182589/149‑1 (MQ=255) gATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCtgt < 8:41350/149‑1 (MQ=255) gTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCt > 5:183181/1‑149 (MQ=255) actacGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGCGGTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGTACTCCTcgcgg > 1:77142/1‑119 (MQ=255) actacGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGTACTCCTcgcgg < 2:77142/119‑2 (MQ=255) ctacGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTc < 6:116308/148‑1 (MQ=255) cgccgcCCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCACGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCctgc > 5:342059/1‑149 (MQ=255) cGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTgg < 3:164979/149‑1 (MQ=255) gACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGTACTCCTcgcggt < 5:370092/112‑3 (MQ=255) gACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGTACTCCTcgcggt > 6:370092/1‑110 (MQ=255) gACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTgg > 7:7462/1‑148 (MQ=255) ccTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGc < 6:35439/121‑1 (MQ=255) ccTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGc > 5:35439/1‑121 (MQ=255) cTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACTAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCt < 4:224235/149‑1 (MQ=255) gCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTgg > 1:65495/1‑149 (MQ=255) ttCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGcc > 3:329891/1‑135 (MQ=255) ttCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGcc < 4:329891/135‑1 (MQ=255) ggTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGc < 4:1083/149‑1 (MQ=255) gtgtGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGc > 7:351292/1‑148 (MQ=255) cTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACt < 8:72287/91‑1 (MQ=255) cTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACt > 7:72287/1‑91 (MQ=255) tGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCtt > 3:367374/1‑149 (MQ=255) ccTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTgc > 2:84230/1‑89 (MQ=255) ccTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTgc < 1:84230/89‑1 (MQ=255) cTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCt > 4:254732/1‑149 (MQ=255) tGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTg > 4:275642/1‑149 (MQ=255) ggCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGAc > 8:164540/1‑149 (MQ=255) ctgctgCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCACCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCtt < 5:225788/148‑1 (MQ=255) tgctgcCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTg > 3:232099/1‑74 (MQ=255) tgctgcCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTg < 4:232099/74‑1 (MQ=255) ctgcCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGtt < 3:254732/149‑1 (MQ=255) ctgcCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGt < 3:346809/148‑1 (MQ=255) ccGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGTCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGttt < 6:183181/147‑1 (MQ=255) acacTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAata > 7:311202/1‑149 (MQ=255) acaaTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCAACCTGGAGTTGGCCATTCTTGCCTAACCGCTGACCGTTGCTTTGTTTCAata > 7:305925/1‑149 (MQ=255) aaGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGtt > 4:302536/1‑126 (MQ=255) aaGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGtt < 3:302536/126‑1 (MQ=255) cTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAgcg > 6:208865/1‑149 (MQ=255) cGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAGCGCGt > 4:113648/1‑149 (MQ=255) ccAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCATGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAGCGCGttt < 7:345566/149‑1 (MQ=255) caacaaGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAGCGCGTTTg < 3:113648/149‑1 (MQ=255) aacaaGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAGCGCGTTTGa < 8:351292/149‑1 (MQ=255) caaGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTTCTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTGAATATGGCTAGTTCAGCGCTTTTGATg < 8:7462/149‑1 (MQ=255) caaGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGc > 6:70840/1‑96 (MQ=255) caaGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGc < 5:70840/96‑1 (MQ=255) gaattcgcgAGTACTCCTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAGCGCGTTTGATgcg > 8:223245/6‑149 (MQ=255) ggACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAGCGCGTTTGATgcgg < 7:164540/149‑1 (MQ=255) ttcgcgAGTACTCCTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGGTTTGTTTCAATATGGCAAGTTCAGCGCGTTTGATgcggc > 5:12292/3‑148 (MQ=255) gcgAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAgcgc > 4:155477/1‑133 (MQ=255) gcgAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAgcgc < 3:155477/133‑1 (MQ=255) gagTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAGCGCGTTTGATGCGGCGATGACCCa < 4:119322/149‑1 (MQ=255) | CGCTTCCTTCCTGGTGGCCGGCTCGGTGTCGTGGATGTACTACGCCGACCGCCTCATGGAGCTGCCTTCCGGTGTGCTGGGC‑GTTGCCCTGGGCACTATCCTGCTGCCGACACTGGCCAAGACCTACGCCAACAAGGACCGCGAGGAGTACTCGCGAATTCTCGACTGGGGCCTGCGCCTGTGCTTCCTGCTGGTACTGCCCTGCACCCTGGCGTTGGCCATTCTTGCCGAACCGCTGACCGTTGCTTTGTTTCAATATGGCAAGTTCAGCGCGTTTGATGCGGCGATGACCCA > NC_002947/708357‑708650 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |