Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 787,188 | C→G | 7.0% | A102A (GCC→GCG) | ettA → | ADP/ATP ratio sensor/translation inhibitor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 787,188 | 0 | C | G | 7.0% | 179.7 / 4.2 | 57 | A102A (GCC→GCG) | ettA | ADP/ATP ratio sensor/translation inhibitor |
Reads supporting (aligned to +/- strand): ref base C (26/27); new base G (2/2); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 |
CGTCGACAAGGAATTCGACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGATGGCCACAACCTGGAGCGCCAGCTGGACGTCGCTGCCGACGCCCTGC > NC_002947/787044‑787336 | cgTCGACAAGGAATTCGACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGcc > 2:242497/1‑149 (MQ=255) gTCGACAAGGAATTCGACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTGC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCt > 6:139312/1‑149 (MQ=255) aaGGAATTCGACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGAc > 8:172903/1‑147 (MQ=255) aGGAATTCTACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAg < 5:350825/149‑1 (MQ=255) aGGAATTCGACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAg > 8:79443/1‑149 (MQ=255) ggAATTCGACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTGC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAgg < 5:139312/149‑1 (MQ=255) ggAATTCGACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAgg > 1:190004/1‑149 (MQ=255) gACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTACGCTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTAc > 1:258759/1‑148 (MQ=255) gACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTAc < 2:258759/147‑1 (MQ=255) cGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCgg < 7:94775/149‑1 (MQ=255) cGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCgg < 1:99784/149‑1 (MQ=255) cGAAGCCCGTCCGATGCCCAACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCt < 4:109229/129‑1 (MQ=255) cGAAGCCCGTCCGATGCCCAACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCt > 3:109229/1‑129 (MQ=255) gCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCGGGCCTGGGCgtcc < 1:213751/133‑4 (MQ=255) gCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCGGGCCTGGGCgtcc < 1:219268/133‑4 (MQ=255) gCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCGGGCCTGGGCgtcc > 2:213751/1‑130 (MQ=255) gCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCGGGCCTGGGCgtcc > 2:219268/1‑130 (MQ=255) gCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGc < 6:281116/149‑1 (MQ=255) cGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGcc > 4:179766/1‑147 (MQ=255) cccGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATg < 5:54841/148‑1 (MQ=255) cGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGcc > 4:64920/1‑148 (MQ=255) tCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTc < 1:242497/149‑1 (MQ=255) gggggTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGGGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACaa < 6:235966/147‑1 (MQ=255) tGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAg < 2:190004/149‑1 (MQ=255) gTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTg < 7:172903/149‑1 (MQ=255) gTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTg < 7:147003/149‑1 (MQ=255) acaGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGa < 5:107382/147‑1 (MQ=255) acaGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGa > 6:107382/1‑147 (MQ=255) acaGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAg > 5:298316/1‑148 (MQ=255) aGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAg < 7:79443/149‑1 (MQ=255) aGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAg > 6:38937/1‑149 (MQ=255) gAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTc < 4:353194/126‑1 (MQ=255) gAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTc > 3:353194/1‑126 (MQ=255) gAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGc > 6:256276/1‑149 (MQ=255) aCCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGcc > 3:88029/1‑148 (MQ=255) gCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGc > 3:350760/1‑149 (MQ=255) gCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGc > 3:292158/1‑149 (MQ=255) gACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGaa < 2:60066/147‑1 (MQ=255) gACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGaa < 3:64920/147‑1 (MQ=255) gACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGaa < 6:298316/147‑1 (MQ=255) cccAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCa < 5:256276/149‑1 (MQ=255) ccaaccaaGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTgg < 8:148927/121‑1 (MQ=255) ccaaccaaGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTgg > 7:148927/1‑121 (MQ=255) ccaaGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGc < 7:60569/142‑1 (MQ=255) caaaGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGc > 8:60569/3‑142 (MQ=255) gtgAAGTGGTCGAGGAAGCGGGCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCTGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGAt < 6:7017/149‑1 (MQ=255) ggTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATc > 6:301933/1‑127 (MQ=255) ggTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATc < 5:301933/127‑1 (MQ=255) cGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGa < 4:74373/138‑1 (MQ=255) cGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGa > 3:74373/1‑138 (MQ=255) gAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGATGGCCACAACCt > 1:279362/1‑149 (MQ=255) aGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGATGGCCACAACCTGGAGCGCCAGc < 3:179766/148‑1 (MQ=255) aTCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGATGGCCACAACCTGGAGCGCCAGCTGGACGt > 8:293436/1‑149 (MQ=255) ggACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGATGGCCACAACCTGGAGCGCCAGCTGGACGTCGCTg > 5:225204/1‑149 (MQ=255) ccAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGATGGcc < 3:116234/113‑1 (MQ=255) ccAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGATGGcc > 4:116234/1‑113 (MQ=255) ccAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGATGGCCACAACCTGGAGCGCCAGCTGGACGTCGCTGCCGACg > 6:164376/1‑149 (MQ=255) ccGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGATGGCCACAACCTGGAGCGCCAGCTGGACGTCGCTGCCGACGCCCTgc < 4:88029/149‑1 (MQ=255) | CGTCGACAAGGAATTCGACGGCGAAGCCCGTCCGATGCCCGACATCAACGTGGGTTAC‑CTGCCACAGGAACCGCAACTGGACCCAACCAAGACCGTGCGTGAAGTGGTCGAGGAAGCGGTCAGCGTAATCAAGGACGCCCAGGCCCGCCTGGACGAGGTCTACGCGGCCTACGCCGAGCCGGATGCCGACTTCGACAAGCTGGCCGCCGAGCAGGCCAAGCTGGAAGCCATCCTGCAGGCCGCCGATGGCCACAACCTGGAGCGCCAGCTGGACGTCGCTGCCGACGCCCTGC > NC_002947/787044‑787336 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |