Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 992,866 | A→T | 7.3% | intergenic (+24/‑128) | der → / → PP_0858 | GTPase Der/methionine/glutamine aminotransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 992,866 | 0 | A | T | 7.3% | 153.8 / 2.6 | 55 | intergenic (+24/‑128) | der/PP_0858 | GTPase Der/methionine/glutamine aminotransferase |
Reads supporting (aligned to +/- strand): ref base A (21/29); new base T (2/2); total (24/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-01 |
CAAGGGCGGCGAGAACCCGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCAGGAAAGAGGGCTCCATGATCCGCAGCAAACT > NC_002947/992719‑993010 | cAAGGGCGGCGAGAACCCGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAg < 4:90961/149‑1 (MQ=255) aaGGGCGGCGAGAACCCGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCaa < 7:317560/147‑1 (MQ=255) aaGGGCGGCGAGAACCCGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGa < 5:361500/149‑1 (MQ=255) aaGGGCGGCGAGAACCCGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGa < 7:326128/149‑1 (MQ=255) aaGGGCGGCGAGAACCCGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGa > 2:33369/1‑149 (MQ=255) cggcgAGAACCCGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCTCCACAAGACGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGcc < 2:281763/149‑1 (MQ=255) aggcgAGAAGCCGTTCGAGTGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCGTGATGTCGCACCACAAGAAGGCCGAGAAGTAGCGTCGCGACAAACGCTATGCTGCGCCATGTGGGGGCGGGCAAGACCGcc < 7:268250/148‑1 (MQ=255) agaACCCGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGACGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCcac > 1:47176/1‑149 (MQ=255) aaCCCGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCca > 6:188656/1‑146 (MQ=255) cccGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGTCTTGCCCGCCCCcacatgg < 2:230750/149‑4 (MQ=255) cccGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGcc > 5:357635/1‑140 (MQ=255) cccGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGcc < 6:357635/140‑1 (MQ=255) cccGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGAc > 1:136975/1‑149 (MQ=255) ccGTAAGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACg > 7:238386/1‑149 (MQ=255) aGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTg < 5:188656/149‑1 (MQ=255) tAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATc > 6:12086/1‑148 (MQ=255) agaagaACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATc > 4:281779/1‑146 (MQ=255) agaagaACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCag < 5:12086/149‑1 (MQ=255) gaagaaCACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCaga < 2:136975/149‑1 (MQ=255) gaagaaCACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCaga < 4:183451/149‑1 (MQ=255) aaCACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGAcc > 2:38266/1‑118 (MQ=255) aaCACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGAcc < 1:38266/118‑1 (MQ=255) cacCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAACAAGGCCGAGAAGAAGCTTCGCGACAAACGCTAAGCAGCGCCATCAGGCGGCGGGCAAGACCTCCCCCACACACGCCCTTAGATCCAGAGCAATc > 8:27126/1‑149 (MQ=255) acCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATcc < 8:238386/149‑1 (MQ=255) aCCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACTGACGCCCTTTGATCCAGAGCAATCCCCCTa < 1:33369/148‑1 (MQ=255) aacaaGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATGGGTTCAACCttttt > 2:111856/1‑149 (MQ=255) acaaGAAACGCCGCCTGATGTCGCACCACAAGACGGCCGATAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTc < 7:27126/149‑1 (MQ=255) caaGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGCCGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTcc > 5:24426/1‑149 (MQ=255) cgccgcCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGNCCGc < 5:65971/149‑1 (MQ=255) cgccTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTc > 1:180103/1‑148 (MQ=255) tGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCt < 3:281779/149‑1 (MQ=255) gTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTa > 2:270610/1‑149 (MQ=255) gTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGAGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCACCACAGACCCCCTTAGATCAAGAGCAATCCCCCTATTGTTTCAACCTTTTTCATGACGGCTCCATCCCCTa > 7:272028/1‑149 (MQ=255) caccacAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGc > 8:224852/1‑148 (MQ=255) accacAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTc < 7:224852/149‑1 (MQ=255) cacaAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCACGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCg > 4:214701/1‑148 (MQ=255) aagaagGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACt > 4:324839/1‑149 (MQ=255) agaagGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTc < 1:270610/149‑1 (MQ=255) agaagGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTc < 3:217059/149‑1 (MQ=255) aagCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCGCGAGCAATCCCCCTTTTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCg < 5:259128/130‑1 (MQ=255) aagCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGCGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGCTCCGCTATGCACg > 6:259128/1‑130 (MQ=255) agCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGat < 6:24426/149‑1 (MQ=255) gcgACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATAccc > 3:285090/1‑149 (MQ=255) gcgACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATAccc > 4:355393/1‑149 (MQ=255) gACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCa < 2:47176/149‑1 (MQ=255) gACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCa < 3:355393/149‑1 (MQ=255) caaaaaCGCCAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCa < 7:306331/146‑1 (MQ=255) cAAACGCTAAGCAGCGCCATGTGGTGGCGGGCAAGACCGCCCCGACAGACGCCATTTGATCCAGAGCAATCCCGCTATTGTTTCAACCTTTTTCCTGTCCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCAg < 7:311415/148‑1 (MQ=255) cAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCt < 7:267903/96‑1 (MQ=255) cAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCt > 8:267903/1‑96 (MQ=255) gcagcGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCAGGAAAGAGGGCt < 3:324839/149‑1 (MQ=255) gcCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCATATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCAGGAAAGAGGGCTCCATg < 1:185407/149‑1 (MQ=255) tgGGGGCGGTCTTGCCCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCAGGAAagag > 7:338993/1‑134 (MQ=255) tgGGGGCGGTCTTGCCCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCAGGAAagag < 8:338993/134‑1 (MQ=255) ggggCGGTCTTGCCCGCCCCCACAGACGCCCTTTGATCCAGAGCAATACCCCTATTGTTTCAACCTGTTTCCTGACCGCTCGATCCGCGATGCTCGGACTCCACCCCGTGCCGGATATACCCCAGGAAAGAGGGCTCCATGATCCgcag > 4:344103/1‑149 (MQ=255) ggcAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCAGGAAAGAGGGCTCCATGATCCGCAGCAAACt < 2:180103/149‑1 (MQ=255) | CAAGGGCGGCGAGAACCCGTACGAGGGTAAGAAGAACACCCTTACCGATCGCCAGGTCAACAAGAAACGCCGCCTGATGTCGCACCACAAGAAGGCCGAGAAGAAGCGTCGCGACAAACGCTAAGCAGCGCCATGTGGGGGCGGGCAAGACCGCCCCCACAGACGCCCTTTGATCCAGAGCAATCCCCCTATTGTTTCAACCTTTTTCCTGACCGCTCGATCCGCTATGCTCGGACTCCACCCCGTGCCGGATATACCCCAGGAAAGAGGGCTCCATGATCCGCAGCAAACT > NC_002947/992719‑993010 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |