Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,166,976 | G→A | 7.1% | W454* (TGG→TAG) | zwfA → | glucose 6‑phosphate‑1‑dehydrogenase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,166,976 | 0 | G | A | 7.1% | 164.7 / 2.1 | 59 | W454* (TGG→TAG) | zwfA | glucose 6‑phosphate‑1‑dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (32/21); new base A (2/2); total (35/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.47e-01 |
CGATGCCTGGCGCAGTGCACGAATTCCGGATGCCTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTGCCAGCGGCCGTGAAGGCTCATGAACT > NC_002947/1166836‑1167121 | cGATGCCTGGCGCAGTGCACGAATTCCGGATGCCTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTTGCGTAATg > 4:76827/1‑149 (MQ=255) cgcAGTGCACGAATTCCGGATGCCTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATgc < 6:279465/149‑1 (MQ=255) cACGAATTCCGGATGCCTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCCGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAg > 4:91449/1‑149 (MQ=255) cACGAATTCCGGATGCCTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCAGGCGATGCGCCCAAg > 1:225131/1‑149 (MQ=255) gAATTCCGGATGCCTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCa > 4:274403/1‑149 (MQ=255) ccTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCAGGCGATGCGCCCAAGCCATACGCGGCggg < 2:225131/148‑1 (MQ=255) cTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGACGGAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGc > 1:291920/1‑149 (MQ=255) cTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCt > 2:26472/1‑149 (MQ=255) cTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCt < 1:26472/149‑1 (MQ=255) tACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGCTGCGCCCAAGCCATACGCGGCGGGCTc > 1:103189/1‑149 (MQ=255) aCGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTcc > 6:34487/1‑149 (MQ=255) tGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGcc > 8:274717/1‑148 (MQ=255) cGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTAGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCt > 2:173101/1‑149 (MQ=255) cGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTAGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCt > 2:178767/1‑149 (MQ=255) gAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTc > 8:149117/1‑149 (MQ=255) aTGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTg < 6:209244/148‑1 (MQ=255) tGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTTGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCa < 3:76827/149‑1 (MQ=255) tGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCa < 2:291920/149‑1 (MQ=255) gcgGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGAt < 4:303658/133‑1 (MQ=255) gcgGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGAt > 3:303658/1‑133 (MQ=255) gcgGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACt > 3:147251/1‑148 (MQ=255) cgGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTAGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGa < 1:178767/149‑1 (MQ=255) cgGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTAGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGa < 1:173101/149‑1 (MQ=255) ggCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGAt > 5:367698/1‑149 (MQ=255) ggCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGAt > 6:123562/1‑149 (MQ=255) ccAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCacac > 5:9498/1‑149 (MQ=255) cAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACAcg > 4:367704/1‑149 (MQ=255) cAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACAcg > 4:17595/1‑149 (MQ=255) cTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATgg > 4:294953/1‑149 (MQ=255) ttCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGa < 3:274403/148‑1 (MQ=255) cgcAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTg < 3:91449/149‑1 (MQ=255) gcAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTgg > 8:157157/1‑149 (MQ=255) cAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGt < 7:149117/149‑1 (MQ=255) ggAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATg < 5:138618/149‑1 (MQ=255) aC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATggg < 6:9498/149‑1 (MQ=255) aC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATggg > 8:284619/1‑149 (MQ=255) aC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATggg < 5:123562/149‑1 (MQ=255) aaTCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGata > 7:280191/1‑149 (MQ=255) aTCGATTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCGCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGatat < 2:103189/149‑1 (MQ=255) aTCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATgggg > 4:101840/1‑145 (MQ=255) aTCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATgggg < 3:101840/145‑1 (MQ=255) gAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCt < 6:367698/148‑1 (MQ=255) aTGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAAtt > 3:300714/1‑149 (MQ=255) ccTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGa > 2:232066/1‑148 (MQ=255) gAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGAACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTg > 2:329234/1‑149 (MQ=255) tggtgCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCACAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTGCCAg > 6:358955/1‑149 (MQ=255) gtgCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTGCCAGCg > 2:231003/1‑149 (MQ=255) gtgCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTGCCAGCg > 4:351656/1‑149 (MQ=255) aGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTGCCAGCGGCCGTGaa < 3:367704/149‑1 (MQ=255) gTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATggg > 6:376686/1‑115 (MQ=255) gTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATggg < 5:376686/115‑1 (MQ=255) ttGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGaa < 4:164799/124‑1 (MQ=255) ttGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGaa > 3:164799/1‑124 (MQ=255) gATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAg > 7:318569/1‑69 (MQ=255) gATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAg < 8:318569/69‑1 (MQ=255) aTCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTGCCAGCGGCCGTGAAGGCt < 7:284619/148‑1 (MQ=255) aTCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTGCCAGCGGCCGTGAAGGCTc < 7:157157/149‑1 (MQ=255) cGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTGCCAGCGGCCGTGAAGGCTCAt > 8:211531/1‑149 (MQ=255) gCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTGCCAGCGGCCGTGAAGGCTCATGAACt > 2:36213/1‑149 (MQ=255) | CGATGCCTGGCGCAGTGCACGAATTCCGGATGCCTACGAGCGGCTGTTGCTCGAAGTGATGCGCGGCAACCAGAACCTGTTCGTGCGCAAGGAC‑GAAATCGAGTATGCCTGGAAGTGGTGCGACCAGTTGATCGCCGGCTGGCGTAATGCGGGCGATGCGCCCAAGCCATACGCGGCGGGCTCCTGGGGGCCGATGAGCTCGATTGCACTGATCACACGCGATGGGAGGGCGTGGTATGGGGATATCTGAATTGAAACTGCCAGCGGCCGTGAAGGCTCATGAACT > NC_002947/1166836‑1167121 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |