| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,322,226 | T→C | 7.1% | N169D (AAT→GAT) | PP_1154 ← | sensory box protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,322,226 | 0 | T | C | 7.1% | 161.1 / 2.7 | 56 | N169D (AAT→GAT) | PP_1154 | sensory box protein |
| Reads supporting (aligned to +/- strand): ref base T (27/25); new base C (2/2); total (29/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
GTCAGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGCCTTTGAACAAGGCATAGGTGGTGCGGCGGTT > NC_002947/1322078‑1322373 | gTCAGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCAtt < 4:300983/149‑1 (MQ=255)gTCAGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCAtt < 6:139884/149‑1 (MQ=255) aGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGa < 7:117814/148‑1 (MQ=255) ggCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAAc < 6:355235/149‑1 (MQ=255) ggCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAAc < 4:243381/149‑1 (MQ=255) gCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGaa > 6:238638/1‑147 (MQ=255) ggCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATTACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCa > 4:269049/1‑149 (MQ=255) gcgcCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCAc < 8:275317/149‑1 (MQ=255) tttGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAAc > 8:166716/1‑149 (MQ=255) tGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATTACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAAc < 3:269049/147‑1 (MQ=255) ccAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGt > 6:149386/1‑148 (MQ=255) gTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGt < 5:238638/149‑1 (MQ=255) gTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGt < 2:326440/149‑1 (MQ=255) gTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGt < 2:321084/149‑1 (MQ=255) tttGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGt > 7:356205/1‑148 (MQ=255) tttGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGt > 4:213976/1‑148 (MQ=255) gCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGc < 6:188749/121‑1 (MQ=255) gCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGc > 5:188749/1‑121 (MQ=255) gTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCggg > 3:358480/1‑149 (MQ=255) cAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAg > 6:315004/1‑103 (MQ=255) aaTGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCt > 7:256353/1‑149 (MQ=255) tGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCAGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGt > 5:107327/1‑149 (MQ=255) tAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGa > 7:10290/1‑149 (MQ=255) tAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGa < 5:149386/149‑1 (MQ=255) ccGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGc < 8:256353/149‑1 (MQ=255) gcCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAg < 4:287541/149‑1 (MQ=255) gcCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAg < 1:164682/149‑1 (MQ=255) aCCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCTATAATCGGCTGCAGGGGTGTGTc < 4:358480/149‑1 (MQ=255) aCCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGgtgtgt < 7:166716/148‑1 (MQ=255) cTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCta > 1:6797/1‑149 (MQ=255) gCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTc > 7:305723/1‑120 (MQ=255) gCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTc < 8:305723/120‑1 (MQ=255) cTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCtatata < 2:6797/149‑1 (MQ=255) ggTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGt > 8:350005/1‑149 (MQ=255) ccTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCcgcgcg > 1:290057/1‑100 (MQ=255) ccTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCcgcgcg < 2:290057/100‑1 (MQ=255) ccTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAgcg > 3:349454/1‑149 (MQ=255) cTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAgcgc > 8:196716/1‑149 (MQ=255) cTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAgcgc > 5:211125/1‑149 (MQ=255) tCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCgcc > 5:379788/1‑149 (MQ=255) cGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCgcctgc < 7:350005/149‑1 (MQ=255) gTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCgcctgcct > 3:1589/1‑149 (MQ=255) tCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGcctgcctg > 5:311016/1‑149 (MQ=255) ccGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCctgg > 6:246751/1‑149 (MQ=255) gcgcACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCctggctgg < 4:349454/149‑1 (MQ=255) ggCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGc < 4:1589/149‑1 (MQ=255) ctgcACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGCCtt < 6:211125/147‑1 (MQ=255) cACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGCCTTTGaa > 5:33313/1‑148 (MQ=255) tGAGTGCGGCCGGCCAGCCATCGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGcc > 7:296882/1‑139 (MQ=255) tGAGTGCGGCCGGCCAGCCATCGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGcc > 7:302413/1‑139 (MQ=255) tGAGTGCGGCCGGCCAGCCATCGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGcc < 8:296882/139‑1 (MQ=255) tGAGTGCGGCCGGCCAGCCATCGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGcc < 8:302413/139‑1 (MQ=255) gTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGCCTTTGAACAAGGCa > 6:200978/1‑149 (MQ=255) ggccggccAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGgtgt < 8:105283/93‑1 (MQ=255) ggccggccAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGgtgt > 7:105283/1‑93 (MQ=255) cggccAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGCCTTTGAACAAGGCATAggtgg > 5:170701/1‑149 (MQ=255) agccaTTGAACAGCACGTAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGCCTTTGAACAAGGCATAGGTGGTgcgg < 3:213976/149‑1 (MQ=255) agccaTTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGCCTTTGAACAAGGCATAGGTGGTgcgg < 7:196716/149‑1 (MQ=255) ttGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGCCTTTGAACAAGGCATAGGTGGTGCGGCGGtt > 2:209314/1‑149 (MQ=255) | GTCAGGCCGGCGCCTTTGCCCAACTGCGCCAGTTTGCTTTCGGTGAGCTGGTCAATGAATAGCATGACCGGCGCCTGACTCACCTCGCTGTCGGTAACCTCCCGGTCCGGGCGCACGGCTGCTGCACTGAGTGCGGCCGGCCAGCCATTGAACAGCACGAAACGGGTGACCTGCTCGCGTGAAATCGCCGCCGCGCGGGCCTGTTCGATAATCGGCTGCAGGGGTGTGTCTATATAGCTGTCAGCGCCTGCCTGGCTGGGCTGGCCTTTGAACAAGGCATAGGTGGTGCGGCGGTT > NC_002947/1322078‑1322373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |