Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,458,117 | T→G | 9.3% | intergenic (+17/+23) | PP_1276 → / ← algA | hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,458,117 | 0 | T | G | 9.3% | 112.8 / 4.5 | 43 | intergenic (+17/+23) | PP_1276/algA | hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase |
Reads supporting (aligned to +/- strand): ref base T (21/18); new base G (2/2); total (23/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.37e-01 |
CTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCACCTCGAT > NC_002947/1457972‑1458259 | cTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑g < 7:94308/149‑1 (MQ=255) gAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑Gcc > 6:270980/1‑148 (MQ=255) cacaAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGt > 5:129574/1‑148 (MQ=255) aaGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGc < 6:243829/141‑1 (MQ=255) aaGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGc > 5:243829/1‑141 (MQ=255) aGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCa < 6:20016/149‑1 (MQ=255) aTCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGGCT‑GACCAGGGGCGa < 6:21094/139‑1 (MQ=255) aTCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGGCT‑GACCAGGGGCGa > 5:21094/1‑139 (MQ=255) aGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTCCGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACt < 3:279335/149‑1 (MQ=255) aGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACt < 5:270980/149‑1 (MQ=255) gggCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTct < 8:83800/139‑2 (MQ=255) gggCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTct > 7:83800/1‑138 (MQ=255) cTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTgcgc < 3:274726/149‑1 (MQ=255) cTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTgcgc > 2:31748/1‑149 (MQ=255) tGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTgcgc > 6:9988/1‑148 (MQ=255) cTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTc > 6:327566/1‑149 (MQ=255) ttCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCAt > 5:361496/1‑132 (MQ=255) ttCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCAt < 6:361496/132‑1 (MQ=255) ttCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGGCT‑GACCAGGGGCGAgc < 8:232268/126‑2 (MQ=255) ttCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGGCT‑GACCAGGGGCGAgc > 7:232268/1‑125 (MQ=255) ttGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGa < 8:206287/136‑1 (MQ=255) ttGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGa > 7:206287/1‑136 (MQ=255) gaggaTGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCGCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAAcgccgc < 5:308138/149‑1 (MQ=255) atgatTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTc > 2:91662/1‑149 (MQ=255) ttCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCa > 8:331815/1‑92 (MQ=255) ttCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCa < 7:331815/92‑1 (MQ=255) gtggggGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCAt < 8:131890/149‑1 (MQ=255) gCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑c > 7:20085/1‑149 (MQ=255) cccATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑Cg < 5:9988/149‑1 (MQ=255) aTTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAg > 6:33251/1‑149 (MQ=255) cGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCAGGCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGt > 1:262911/1‑148 (MQ=255) aGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCg > 3:151023/1‑149 (MQ=255) cccGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATACT‑CGAAGCGCTCGATGTCATCCTCGccc < 8:20085/149‑1 (MQ=255) gAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAgg < 5:327566/149‑1 (MQ=255) gAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTcc > 6:95735/1‑149 (MQ=255) aaTAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGCCGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTccc > 6:188694/1‑149 (MQ=255) aaTAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTccc > 7:275515/1‑149 (MQ=255) aTAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCg < 5:33251/149‑1 (MQ=255) gCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGCCt > 3:15547/1‑149 (MQ=255) gCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACt > 5:151903/1‑149 (MQ=255) gCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCAc < 2:262911/149‑1 (MQ=255) ccTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGTGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCACCTCgat > 3:291251/1‑148 (MQ=255) ccTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCTCCGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCACCTCgat < 1:91662/149‑1 (MQ=255) | CTCGAAATGACTGCCACAAGCATCAGGGCTGAATCCTTCGAATTTGAAGGGGAGGATGATTTGCAGCGACCTTTCAGGGTGGTGGGTGGCCCATTCGACATCTACGTCATAGCCCCGAGCGTTGAATAAGCAGGCTCGCCCCTGGTCA‑GCCCAGGGGCGAGTCAGCATTTACTGCGCGATGGTCTTCACCGAAACGCCGCGCTCGATGGGGGTGGACGTGCGCCCATACACATCCT‑CGAAGCGCTCGATGTCATCCTCGCCCAGGTAGCTCCCGGACTGCACCTCGAT > NC_002947/1457972‑1458259 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |