Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 165,266 | A→G | 10.5% | I64T (ATC→ACC) | pntB ← | pyridine nucleotide transhydrogenase subunit beta |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 165,266 | 0 | A | G | 10.5% | 149.9 / 8.0 | 57 | I64T (ATC→ACC) | pntB | pyridine nucleotide transhydrogenase subunit beta |
Reads supporting (aligned to +/- strand): ref base A (26/25); new base G (3/3); total (29/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 |
CACGGCGGCGATGGCAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAGCACAC > NC_002947/165118‑165414 | cACGGCGGCGATGGCAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGa > 4:138169/1‑149 (MQ=255) cggcgATGGCAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCg > 2:111610/1‑149 (MQ=255) gATGGCAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGGTATCGGCta < 5:187385/149‑2 (MQ=255) gCAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGc < 8:80471/149‑1 (MQ=255) aaTGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCaa < 1:315834/149‑1 (MQ=255) cacCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAg > 6:4871/1‑149 (MQ=255) aGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCtt < 3:138169/149‑1 (MQ=255) cGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGACCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTtata > 2:356842/1‑148 (MQ=255) aTCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGACCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAAt < 1:356842/149‑1 (MQ=255) aTGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACTAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGa < 1:111610/148‑1 (MQ=255) gCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGGTATCGGCTATGTCa < 6:50401/121‑1 (MQ=255) gCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGGTATCGGCTATGTCa > 5:50401/1‑121 (MQ=255) gCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGa < 7:347642/146‑1 (MQ=255) gCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGa > 8:347642/1‑146 (MQ=255) tgtgCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGcc > 2:22002/1‑148 (MQ=255) gCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATa < 4:108807/104‑1 (MQ=255) gCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATa > 3:108807/1‑104 (MQ=255) cATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCg > 2:369589/1‑149 (MQ=255) aTGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCg > 7:250583/1‑148 (MQ=255) tGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCaa > 1:131423/1‑126 (MQ=255) tGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCaa < 2:131423/126‑1 (MQ=255) gAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAg > 5:316380/1‑138 (MQ=255) gAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAg < 6:316380/138‑1 (MQ=255) aaaGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAg < 6:221486/148‑1 (MQ=255) aGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGa < 4:272534/149‑1 (MQ=255) gggCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTg < 4:214114/136‑1 (MQ=255) gggCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTg > 3:214114/1‑136 (MQ=255) gggCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGcc > 2:197027/1‑149 (MQ=255) aTTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCAt > 7:215393/1‑149 (MQ=255) ttGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGc < 1:369589/148‑1 (MQ=255) tCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGAt > 7:85071/1‑148 (MQ=255) tttCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATg < 1:197027/149‑1 (MQ=255) cGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGcc < 5:4871/148‑1 (MQ=255) ggCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTg < 8:250583/148‑1 (MQ=255) aTCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTgccgcgccg > 4:111058/1‑149 (MQ=255) aaCCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAg > 4:217167/1‑149 (MQ=255) aaCCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAg < 8:215393/149‑1 (MQ=255) aaCCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAg > 5:288230/1‑149 (MQ=255) gtcggcggCACCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGAt < 5:9182/132‑1 (MQ=255) gtcggcggCACCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGAt > 6:9182/3‑134 (MQ=255) gcggTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAggtggt < 3:111058/149‑1 (MQ=255) gcggTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAggtggt > 8:210624/1‑149 (MQ=255) gTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAAc > 1:32402/1‑123 (MQ=255) gTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAAc < 2:32402/123‑1 (MQ=255) gccgACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGc > 8:153576/1‑148 (MQ=255) gcagGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGACAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGccc > 5:218621/1‑149 (MQ=255) gCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGa < 8:33905/149‑1 (MQ=255) ttgccacaGCCGGTATCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTg > 6:264987/8‑149 (MQ=255) tgccacaGCCGGTATCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTg > 1:44561/7‑148 (MQ=255) aCATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGa < 3:217167/148‑1 (MQ=255) cacaGCCGGTATCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATg < 5:264987/146‑1 (MQ=255) aTAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCt < 5:139032/143‑1 (MQ=255) aTAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCt > 6:139032/1‑143 (MQ=255) aGCCGATACCGGCTGTGGCAAGTTCAGCGCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAg > 1:211778/1‑149 (MQ=255) aGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAg > 7:298971/1‑149 (MQ=255) gCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAg > 3:17144/1‑148 (MQ=255) ccGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAGca < 1:22002/149‑1 (MQ=255) ccGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAGca < 4:17144/149‑1 (MQ=255) aTACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAGCacac < 2:211778/149‑1 (MQ=255) | CACGGCGGCGATGGCAATGAACACCGCGGCCAGGCCGATCATGCTGTGCATGAAAGCGACCAGTTCGGGCATTTTGGTCATTTCGACGCGCTTGGCCATGATCGAACCGGCGGTGCCGCCGACCAGCAGGCCGACGATGACATAGCCGATACCGGCTGTGGCAAGTTCAGCCCCAAGCTTATAAATGAGGCCAACCGTAGTGAGGATGGCGAGCCCCATGCCGATCATGCCGAACAGATTGCCGCGCCGCGAGGTGGTCGGGTGCGACAGGCCCTTGAGCGCCTGGATGAAGCACAC > NC_002947/165118‑165414 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |