Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,555,388 | A→C | 9.8% | intergenic (+26/+48) | sbcB → / ← PP_1366 | exodeoxyribonuclease I/transcriptional regulator MvaT |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,555,388 | 0 | A | C | 9.8% | 150.1 / 7.8 | 51 | intergenic (+26/+48) | sbcB/PP_1366 | exodeoxyribonuclease I/transcriptional regulator MvaT |
Reads supporting (aligned to +/- strand): ref base A (23/23); new base C (3/2); total (26/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 |
TGGGCGACTTCGAAAAGGCGCGCCAGCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTGGTTTCGATCACTT > NC_002947/1555241‑1555536 | tGGGCGACTTCGAAAAGGCGCGCCAGCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCTATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑t > 8:96708/1‑149 (MQ=255) aCTTCGAAAAGGCGCGCCAGCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCg < 2:296749/149‑1 (MQ=255) cGAAAAGGCGCGCCAGCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAC‑ATTGCCGGCg < 5:352487/148‑1 (MQ=255) gAAAAGGCGCGCCAGCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAC‑ATTGCCGGCGtt < 6:278730/149‑1 (MQ=255) gAAAAGGCGCGCCAGCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGtt > 1:147499/1‑149 (MQ=255) aaaGGCGCGCCAGCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGtttt < 6:192112/149‑1 (MQ=255) aaGGCGCGCCAGCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGttttt > 1:41480/1‑149 (MQ=255) gcgcgcCAGCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTttgtt < 2:41480/149‑1 (MQ=255) gCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAg < 6:21245/149‑1 (MQ=255) aGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCaa < 1:42307/149‑1 (MQ=255) ggAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCg > 4:269500/1‑121 (MQ=255) ggAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCg < 3:269500/121‑1 (MQ=255) gcCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTtgttgt < 4:266669/127‑1 (MQ=255) gcCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTtgttgt > 3:266669/1‑127 (MQ=255) ccGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCgg < 1:236590/149‑1 (MQ=255) acgaGGCAGGCAGGCGCGTGTTGGA‑GCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATaa > 2:237485/1‑149 (MQ=255) gcaggcaggcGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAg < 8:49454/149‑1 (MQ=255) gcgcGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCTATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCcagcag < 7:96708/149‑1 (MQ=255) gcgTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAggg > 6:214992/1‑149 (MQ=255) tgtTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTttgtt > 6:238018/1‑103 (MQ=255) tgtTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTttgtt < 5:238018/103‑1 (MQ=255) gAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCa < 8:64869/148‑1 (MQ=255) gCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCtt < 1:237485/149‑1 (MQ=255) aTGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTcgc > 5:29511/1‑149 (MQ=255) tCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCgccgcc > 3:206283/1‑149 (MQ=255) gACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGccc > 7:123693/1‑148 (MQ=255) cAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGc < 8:123693/148‑1 (MQ=255) aGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCtt > 3:219319/1‑149 (MQ=255) aaCGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTc > 4:77013/1‑148 (MQ=255) gCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCt > 8:347558/1‑114 (MQ=255) gCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCt < 7:347558/114‑1 (MQ=255) aaTCGGCTGATGGCAGATAAACAAAAACGCCGGCAAGTGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTc > 1:60459/1‑139 (MQ=255) aaTCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTc < 2:60459/138‑1 (MQ=255) aaTCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAg < 2:56572/149‑1 (MQ=255) aaTCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCACAAGTGGCTTTCCACTCTTTCAg > 8:335180/1‑149 (MQ=255) aGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCt > 6:368947/1‑140 (MQ=255) aGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCt < 5:368947/140‑1 (MQ=255) aGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTgc > 4:315225/1‑149 (MQ=255) gATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTgcc < 4:206283/149‑1 (MQ=255) tAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTgccgc < 3:77013/149‑1 (MQ=255) aaCAAAAACGCCGGCAC‑ATTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCt > 7:256598/1‑149 (MQ=255) aCAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAg > 6:142009/1‑129 (MQ=255) aCAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCtt > 2:16172/1‑149 (MQ=255) aaaaaCGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTg > 3:285644/1‑149 (MQ=255) aaaaCGCCGGCAA‑TTTTCCGTCGTTTTTGTTGTGCGAAGAAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGTTTGCCCAGATTTCAAACACGTAGCCGCCCAAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGACGACTTTgg > 4:183597/1‑149 (MQ=255) aaaCGCCGGCAC‑ATTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTGGt > 4:316311/1‑149 (MQ=255) aaCGCCGGCAC‑ATTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTGGtt > 4:119824/1‑149 (MQ=255) aCGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTGGttt < 6:29511/149‑1 (MQ=255) cGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTGGTTTCGAt < 4:285644/149‑1 (MQ=255) ggCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTGGTTTCGa < 7:17069/147‑1 (MQ=255) ggCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTGGTTTCGa > 8:17069/1‑147 (MQ=255) a‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATTCTGATAATCAGTCCAGCAGGTTTGCCCATCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCAATCTTTCAGGTTCTTTTGTTTGCCGCCTTTGGTTTCGATCACtt < 3:183597/149‑1 (MQ=255) | TGGGCGACTTCGAAAAGGCGCGCCAGCAAGCCTGGGAGGGCGCCGACGAGGCAGGCAGGCGCGTGTTGGAGGCCTGGCAACTGCATGCTCGACAATTGCAGGAACGCTATTCAATCGGCTGATGGCAGATAAACAAAAACGCCGGCAA‑TGTGCCGGCGTTTTTGTTGTGCGAAGCAAGAGGGCGTATGCGGATAATCAGTCCAGCAGGGTTGCCCAGCTTTCAACCACGTCGCCGCCCCAAGTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCGCCTTTGGTTTCGATCACTT > NC_002947/1555241‑1555536 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |