| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,591,716 | A→C | 6.0% | C60G (TGC→GGC) | PP_1395 ← | AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,591,716 | 0 | A | C | 6.0% | 211.1 / 3.9 | 67 | C60G (TGC→GGC) | PP_1395 | AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (29/34); new base C (2/2); total (31/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01 | |||||||||||
CGCAGGCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAG > NC_002947/1591568‑1591863 | cgcAGGCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGca < 2:184572/149‑1 (MQ=255) gcAGGCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGca < 6:280807/148‑1 (MQ=255) ggCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAgg < 5:281728/149‑1 (MQ=255) ccAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAATGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAggg > 1:214045/1‑147 (MQ=255) ccAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGTGCATCCTTGCCCAGGGCa < 5:120471/149‑1 (MQ=255) ccAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGTGCATCCTTGCCCAGGGCa < 1:250301/149‑1 (MQ=255) ccAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAggg > 2:210263/1‑147 (MQ=255) cAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAg < 3:350789/149‑1 (MQ=255) ggCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGc < 2:311238/149‑1 (MQ=255) cTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTg < 3:79591/149‑1 (MQ=255) ttGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCTAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTgc < 8:303916/149‑1 (MQ=255) ttCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAg < 6:128821/149‑1 (MQ=255) ttCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAg < 2:36911/149‑1 (MQ=255) ggggCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAgggtgg < 5:188666/149‑1 (MQ=255) ggCTGGCATCCAGCCTCATGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAgggtggg > 3:319858/1‑148 (MQ=255) ggCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGCCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAgggtgggt < 1:116729/149‑1 (MQ=255) aTCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAgggtgg < 3:327911/140‑1 (MQ=255) aTCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAAc > 8:216165/1‑149 (MQ=255) aTCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAAc > 6:54836/1‑149 (MQ=255) aTCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAAc > 5:10374/1‑149 (MQ=255) aTCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAAc > 8:116460/1‑149 (MQ=255) aTCCACCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCAAGTAATGCAGTGGGTCGTAGGCGTACTCCTCGTCACCCAGGAACAAGC‑TTTTGCTGCCCTGGGCAAGGATGAACAGGGCAGCCTGCGCCAgtgtcg > 4:327911/1‑138 (MQ=255) cAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTa > 1:303722/1‑149 (MQ=255) ccTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACAt > 2:127948/1‑149 (MQ=255) tCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTAc < 5:162997/145‑1 (MQ=255) tCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTAc > 6:162997/1‑145 (MQ=255) aCGGCGCTGAGTGGCAAGGTCACCGAAATGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTc < 2:214045/149‑1 (MQ=255) gcgcTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGgt < 5:102279/149‑1 (MQ=255) gcgcTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGgt < 6:28229/149‑1 (MQ=255) gcgcTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGgt < 6:10374/149‑1 (MQ=255) cAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAAc < 3:138585/143‑1 (MQ=255) cAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAAc > 4:138585/1‑143 (MQ=255) aaGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAg > 2:141164/1‑149 (MQ=255) ccATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATG < 7:216165‑M1/149‑1 (MQ=255) gTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCC > 8:91943‑M1/1‑148 (MQ=255) gTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCC > 4:124411‑M1/1‑148 (MQ=255) aTGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATg < 1:141164/149‑1 (MQ=255) aGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGgt < 1:35764/110‑1 (MQ=255) aGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGgt > 2:35764/1‑110 (MQ=255) tCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCGTTTTGCTGCCCTGGGCAAGGATGCACAGGGAAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCATCAGGTACAGGTCATCGATGGCCGATGCTGGACCa > 1:237029/1‑148 (MQ=255) gTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAg < 1:210263/148‑1 (MQ=255) aGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACa > 1:251547/1‑117 (MQ=255) aGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACa < 2:251547/117‑1 (MQ=255) aGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGc > 4:199451/1‑149 (MQ=255) gCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTc > 4:246516/1‑149 (MQ=255) gTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAg > 1:180730/1‑142 (MQ=255) gTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAg < 2:180730/142‑1 (MQ=255) tACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGcc > 4:63490/1‑149 (MQ=255) cTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGccc < 3:124411/148‑1 (MQ=255) cTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCAt < 3:63490/149‑1 (MQ=255) aCCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGt < 4:319858/149‑1 (MQ=255) ccAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCTATGCTGGACCAAAGGGCTCGCCCGCATGGCGGtt > 1:206253/1‑148 (MQ=255) aGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGTAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCATCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGAt < 2:237029/149‑1 (MQ=255) aGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTgg < 4:337397/113‑1 (MQ=255) aGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTgg > 3:337397/1‑113 (MQ=255) ggC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCtcg > 2:303722‑M2/1‑146 (MQ=255) ggC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAAAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCtcg < 1:100982‑M2/149‑4 (MQ=255) gC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCtcgg < 8:210280‑M2/149‑5 (MQ=255) ttGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAgctgatcaaccgccatgcgggcgagccctttggtccagcatcggcca < 7:116460‑M1/148‑48 (MQ=255) agcctgcCCTGTGCATCCTTGCCCAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAg > 7:167126/4‑149 (MQ=255) tgcCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTc > 6:57989/1‑148 (MQ=255) gcCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGAGGTTGATCAGCTCGTCCAGCTc > 5:368548/1‑147 (MQ=255) cccTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGTGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCtcg > 3:116009‑M2/1‑135 (MQ=255) cccTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCAGCAGGTACAGGTCATCGATGGCGGATGCAGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCCGCtcg < 4:116009‑M2/138‑4 (MQ=255) gcatccttGCCCAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGCTCAGCTCGGCCAGCTCCAGGCGCTg > 6:178351/8‑149 (MQ=255) cAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTg > 3:230233/1‑148 (MQ=255) cAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGc < 7:91943/149‑1 (MQ=255) aaGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCa < 5:54836/149‑1 (MQ=255) tGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTcc < 3:199451/149‑1 (MQ=255) cacaGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTcc < 6:274313/147‑1 (MQ=255) cacaGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAg > 3:213040/1‑149 (MQ=255) cacaGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAg > 3:217878/1‑149 (MQ=255) cacaGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAGGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTcc > 5:274313/1‑147 (MQ=255) acaGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAgctgatcaaccgccatgcgggcgagccctttggtccagcatcgg < 4:52641‑M1/123‑45 (MQ=255) acaGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAgctgatcaaccgccatgcgggcgagccctttggtccagcatcgg > 3:52641‑M1/1‑79 (MQ=255) acaGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAgg > 6:316881/1‑134 (MQ=255) acaGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAgg < 5:316881/134‑1 (MQ=255) | CGCAGGCCCAGGCTTGGGTTCTCGGGGCTGGCATCCAGCCTCACGGCGCTGAGTGGCAAGGTCACCGAAACGACCATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGC‑TTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGATGCTGGACCAAAGGGCTCGCCCGCATGGCGGTTGATCAGCTCGGCCAGCTCCAGGCGCTGCAGTTCCAG > NC_002947/1591568‑1591863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |