| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 185,723 | T→A | 6.3% | H139L (CAT→CTT) | PP_0162 ← | ECF family RNA polymerase sigma‑70 factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 185,723 | 0 | T | A | 6.3% | 239.6 / 5.0 | 79 | H139L (CAT→CTT) | PP_0162 | ECF family RNA polymerase sigma‑70 factor |
| Reads supporting (aligned to +/- strand): ref base T (34/40); new base A (3/2); total (37/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
TGACCGTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCC > NC_002947/185579‑185869 | tgACCGTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCtt > 3:219153/1‑149 (MQ=255) gACCGTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCtt > 3:189131/1‑148 (MQ=255) gACCGTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCAATGGCCTGATGCtt > 8:80166/1‑148 (MQ=255) cGTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGc < 4:160496/149‑1 (MQ=255) cGTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGc < 4:228370/149‑1 (MQ=255) gTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGcc > 7:338512/1‑149 (MQ=255) tttGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGcccc < 4:322063/148‑1 (MQ=255) tttGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCt > 1:84861/1‑149 (MQ=255) tGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCAATGGCCTGATGCTTCAGCCCCTc < 7:80166/148‑1 (MQ=255) aTCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCTGCCCCTCGCAt > 5:245221/1‑149 (MQ=255) tCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCCGGCGATGGCCTGATGCTTCAGCCCCTCGCa < 1:33355/148‑1 (MQ=255) atggCGTGCGACGGTCATTGATTCAGCAGTCGTCTTCATAGCGCAGCAAGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGa < 7:105157/147‑1 (MQ=255) gggCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGc > 2:326805/1‑143 (MQ=255) gggCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGc < 1:326805/143‑1 (MQ=255) gTGCGACGTTCTTGGATTCAGCAGTCGTATTCATAGCGCTGCAGGTAGCAGTGATTGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCGATCTGTT‑CGGCGATGGCCTGATGCTTCTGCCCCTCGCATTGAGCcag < 4:294979/149‑1 (MQ=255) cGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCcagcag < 6:175912/149‑1 (MQ=255) gACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCcagcag > 2:7407/1‑148 (MQ=255) aTGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATgcgc < 4:289433/149‑1 (MQ=255) gATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGAc < 8:338512/149‑1 (MQ=255) agcagTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCACCGGTGCGCACGGAGATCCCCATCTGTT‑CGGCCATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTAcc > 6:127063/1‑149 (MQ=255) agcagTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTAcc > 5:332770/1‑149 (MQ=255) agcagTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTAcc > 8:94961/1‑149 (MQ=255) agTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTg < 6:245221/149‑1 (MQ=255) tcgtcTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTggg > 3:362509/1‑149 (MQ=255) ttCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGttt > 4:312251/1‑147 (MQ=255) cATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGa < 4:258277/147‑1 (MQ=255) cATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGa < 3:312251/147‑1 (MQ=255) aTAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGc > 1:159141/1‑149 (MQ=255) aGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCg > 1:147066/1‑149 (MQ=255) gcgcAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGt < 6:332770/149‑1 (MQ=255) gcagcaCGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTc > 6:256356/1‑148 (MQ=255) agcaCGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAg > 6:23189/1‑149 (MQ=255) gTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGc > 6:160878/1‑149 (MQ=255) cAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGc < 1:7407/149‑1 (MQ=255) gTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGa > 4:256739/1‑128 (MQ=255) gTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGa < 3:256739/128‑1 (MQ=255) aTAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATAc > 4:146373/1‑149 (MQ=255) tAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGc > 2:280154/1‑127 (MQ=255) tAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGc < 1:280154/127‑1 (MQ=255) tAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACg < 5:148481/149‑1 (MQ=255) gagCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCt < 3:146373/149‑1 (MQ=255) cgcATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCaa < 8:121223/149‑1 (MQ=255) cgcATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCaa < 5:256356/149‑1 (MQ=255) cATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGc < 4:74405/149‑1 (MQ=255) ggCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAAt < 4:219153/148‑1 (MQ=255) gATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCca < 7:94961/149‑1 (MQ=255) aTGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAAt > 7:119594/1‑144 (MQ=255) aTGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAAt < 8:119594/144‑1 (MQ=255) tAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCcagcag < 2:84861/149‑1 (MQ=255) gcTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCcagca < 6:27473/75‑1 (MQ=255) gcTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCagcagcagc > 5:362497/1‑149 (MQ=255) cTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCATGCAATTCCAGCAGCAGCt > 4:177504/1‑149 (MQ=255) cGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCgg < 5:75185/149‑1 (MQ=255) cACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGa < 1:30944/149‑1 (MQ=255) aCGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGAc > 2:115128/1‑149 (MQ=255) agaTCCCCATCTGTT‑CGGCGATGGCCTTATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAg < 5:370785/149‑1 (MQ=255) tCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAggt < 5:127063/148‑2 (MQ=255) ccccATATGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGa > 3:199032/1‑149 (MQ=255) cccATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGa < 4:362509/148‑1 (MQ=255) cccATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGAc > 3:166953/1‑149 (MQ=255) cccATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGAc < 5:112970/149‑1 (MQ=255) ccATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCcag > 2:55471/1‑118 (MQ=255) ccATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGAc > 2:100729/1‑148 (MQ=255) cATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCa < 5:160878/149‑1 (MQ=255) aTCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTcgcg > 7:126481/1‑128 (MQ=255) aTCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTcgcg < 8:126481/128‑1 (MQ=255) gTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAgaggggacgcg > 1:312283/1‑140 (MQ=255) gTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAg < 2:312283/137‑1 (MQ=255) aatgCGAGGGGCTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTc > 5:125738/4‑149 (MQ=255) ggCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCg < 4:199032/149‑1 (MQ=255) cGAGGGGCTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCgg > 5:267059/1‑148 (MQ=255) cGAGGGGCTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGc < 6:125738/149‑1 (MQ=255) gaggggcTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGca > 3:311674/7‑149 (MQ=255) gggcTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACAt < 6:267059/146‑1 (MQ=255) ggCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACAt > 6:105940/1‑149 (MQ=255) ccTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATgg < 1:100729/149‑1 (MQ=255) cTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATggg > 7:31036/1‑149 (MQ=255) cTGATGCTTCAGCCCCTCGCATGGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATggg > 7:237189/1‑149 (MQ=255) aTGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGcc < 5:105940/148‑1 (MQ=255) | TGACCGTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTT‑CGGCGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCC > NC_002947/185579‑185869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |