| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,780,097 | T→C | 20.0% | intergenic (+56/+50) | PP_1587 → / ← dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,780,097 | 0 | T | C | 20.0% | 36.3 / 4.8 | 20 | intergenic (+56/+50) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base T (7/9); new base C (2/2); total (9/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01 | |||||||||||
GTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTA‑TCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGT > NC_002947/1779956‑1780244 | gTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTACTCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAAt < 1:101393/148‑1 (MQ=255) ccTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTA‑TCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGt < 7:190246/149‑1 (MQ=255) ggtaTGAGGTGGTTCGGCAAGTACTGGGTGAGCTGGATATGTGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTA‑TCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTgg < 7:175873/146‑1 (MQ=21) gggATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTA‑TCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTgg < 7:284984/149‑1 (MQ=255) gATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTA‑TCAAGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGa < 5:308984/149‑1 (MQ=21) gtggggCGGCTAGTAGTGTGTGAGGTGCATATGAGCTAGGCCATCCTGGGTTCTGTGAAGTAGACCCTA‑TCCAGGCACTTCGCGCGCGGGCCCGCTCCCACTCGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGc < 6:95648/149‑1 (MQ=255) gagtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTA‑TCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAgcg > 8:119422/1‑97 (MQ=255) gagtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTA‑TCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAgcg < 7:119422/97‑1 (MQ=255) gtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTA‑TCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTAc < 1:361195/101‑1 (MQ=255) gtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTA‑TCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTAc > 2:361195/1‑101 (MQ=255) cGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGc > 2:55396/1‑148 (MQ=21) cccACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgc > 3:108960/1‑149 (MQ=21) ccACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgcg > 8:143354/1‑149 (MQ=255) cacaGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATgc < 5:63036/99‑1 (MQ=255) cacaGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATgc > 6:63036/1‑99 (MQ=255) tgcgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAg < 6:3292/113‑1 (MQ=255) tgcgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAg > 5:3292/1‑113 (MQ=255) tgcgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCAcc > 4:364032/1‑149 (MQ=255) gctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCAt < 4:349046/128‑1 (MQ=255) gctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCAt > 3:349046/1‑128 (MQ=255) ttGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGt > 6:379759/1‑149 (MQ=255) ttGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGt > 8:205206/1‑149 (MQ=255) ttGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGACAGCGAAGGGCTTGATCAGCGGTTTTGCAGGAAGGCGCGAATACGCTCCGCCGCTTCGATGAATTCGGCCACCTTTGCAACCAGTGCCATGCGCACCCGCCCGGCACCCggct > 4:2714/1‑147 (MQ=255) | GTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTA‑TCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGT > NC_002947/1779956‑1780244 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |