| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,559 | C→A | 23.1% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,559 | 0 | C | A | 23.1% | 171.9 / 45.8 | 82 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (30/33); new base A (7/12); total (37/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.86e-01 | |||||||||||
CCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAC > NC_002947/195412‑195706 | ccAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACcg > 3:350618/1‑149 (MQ=32) accgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 7:274708/149‑1 (MQ=34) ccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCTGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTAGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg < 2:324409/149‑1 (MQ=25) ccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACATACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 1:287479/149‑1 (MQ=21) cgtgaccCTGTCCAACGGCCATTCCATCACTGTTGAAGCCGGCAATACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGc < 4:260283/149‑1 (MQ=11) cgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGACCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg < 1:71672/149‑1 (MQ=25) ccTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGa > 7:274172/1‑149 (MQ=39) tCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCTGTAATTTCGAGCAACTGAccc < 1:363140/148‑1 (MQ=255) cAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAAAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCg > 4:330609/1‑148 (MQ=255) cAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGC‑CCGTCCGCGTCACCATCGAGAACGCCCCCGGCGGGAATTTCGAGCAACTGACACCGAATCCGAc > 4:199712/1‑149 (MQ=14) gTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcccc < 8:274172/149‑1 (MQ=255) atcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAGCCCGAAACCGCCCCCGGc > 4:199719/1‑149 (MQ=255) tcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGc > 7:272666/1‑148 (MQ=40) ggCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 8:56376/149‑1 (MQ=37) ggCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAAAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 3:330609/149‑1 (MQ=37) gCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCATCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 5:13725/149‑1 (MQ=37) aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 8:254437/147‑1 (MQ=37) aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc > 7:254437/1‑147 (MQ=37) aGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 6:344164/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc > 5:290974/1‑149 (MQ=34) aGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGacac < 3:199719/149‑1 (MQ=37) gATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcacca‑ccac > 1:259047/1‑149 (MQ=39) aTTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACacca‑ccacc > 2:100400/1‑149 (MQ=39) ccAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGa > 6:32959/1‑149 (MQ=39) aGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGAcc > 2:638/1‑149 (MQ=39) acaccGGCAAATGACGTCTACA‑ACAACGGTTCGA‑CCTTAAGCGTCACCATCGAGAACTACACCGGAGTTAATTTCTAGAAAATGACAACGAATAAGACCCCGGCTAAGACCCAGATCAACTACTCGGTCGACACCA‑CCACAGAGAca > 1:45595/4‑146 (MQ=2) gCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGc < 1:100400/149‑1 (MQ=39) gaaTGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGa < 6:197581/148‑1 (MQ=14) cAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGc > 8:23364/1‑147 (MQ=38) tGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGcc > 8:230937/1‑149 (MQ=37) tGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGcc < 6:290974/149‑1 (MQ=37) tGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAg < 8:19512/146‑1 (MQ=12) tGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAg > 7:19512/1‑146 (MQ=12) aCGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCg > 5:81256/1‑149 (MQ=17) cTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGACgg > 5:362105/1‑149 (MQ=37) tACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGt > 7:276624/1‑149 (MQ=37) ca‑acaaCGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTc < 8:95499/148‑1 (MQ=17) a‑acaacGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 3:199712/149‑1 (MQ=37) accaacGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 8:83881/147‑1 (MQ=12) acaacGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc < 8:272666/149‑1 (MQ=37) acaacGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 1:264594/1‑149 (MQ=37) caacGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCCACCGCGACCCTGACGGCGAGCCCGTCg < 1:22021/143‑1 (MQ=255) caacGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCg > 2:22021/1‑142 (MQ=37) aacGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGa > 4:103161/1‑121 (MQ=38) aacGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGa < 3:103161/121‑1 (MQ=38) aacGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGa < 2:259047/149‑1 (MQ=37) ggTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg < 5:202857/149‑1 (MQ=17) gTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc < 7:23364/149‑1 (MQ=37) ttCGA‑CCGTCACCCTCACCATCGAGAACGCCACCGGCGGTAATTTCCAGCAACAGACCCCCAATCCGACCCCGGCTCAGACCACGAACAACGACTCCGTCCACACCA‑CCACCGCCACCCACACGGCGACCCCGTCGCTCACCGAAggcg > 3:371478/1‑149 (MQ=11) gA‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCTAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 4:97381/149‑1 (MQ=12) gA‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 4:20310/1‑149 (MQ=17) a‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 6:4916/1‑149 (MQ=37) a‑CCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 3:20310/149‑1 (MQ=17) ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 3:308264/1‑146 (MQ=37) ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 4:308264/146‑1 (MQ=37) tCAGCGTCACCATCGAGACCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc < 5:377547/149‑1 (MQ=12) tCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc > 7:311171/1‑149 (MQ=39) cAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCAAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCCCGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 6:306043/1‑134 (MQ=255) cAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCAAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg < 5:306043/134‑1 (MQ=37) aGCGTCACCATCGAGATCACCACAGGCGGTAATTTCGACCATCTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 4:280293/148‑1 (MQ=11) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 8:11036/149‑1 (MQ=17) gTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa < 5:89026/149‑1 (MQ=39) tCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 2:61714/1‑148 (MQ=39) aCCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca < 4:350618/148‑1 (MQ=39) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa > 2:295557/1‑140 (MQ=37) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 1:295557/140‑1 (MQ=37) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 7:58657/1‑149 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 3:65941/1‑149 (MQ=17) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTg < 5:4916/149‑1 (MQ=39) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 1:59558/1‑148 (MQ=17) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc > 3:308689/1‑149 (MQ=39) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 1:61714/149‑1 (MQ=39) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGCCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 5:32959/149‑1 (MQ=255) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 2:59558/149‑1 (MQ=17) aCGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGTCGTGATCACTTACACCGTGACCCt < 7:230937/148‑1 (MQ=255) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 8:311171/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 8:276624/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 2:264594/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:638/149‑1 (MQ=39) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt > 1:212494/1‑147 (MQ=17) ccACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 8:202635/1‑148 (MQ=39) ccACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 8:197272/1‑148 (MQ=39) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa > 8:331073/1‑146 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 7:331073/146‑1 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCAACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 4:12062/1‑148 (MQ=12) cACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 2:37271/1‑148 (MQ=39) ccGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGATCAGACCACGATCAACGACTAGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGACGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc < 6:362105/149‑1 (MQ=255) | CCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGTTCGA‑CCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAC > NC_002947/195412‑195706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |